AT-GTL1 (Arabidopsis thaliana)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 AT1G33240 T247877_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00		 Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a		 (Direct) (Direct)
AT-GTL1
M06969_2.00		 Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G33240.1 MADF 76 147
AT1G33240.1 MADF 449 521
AT1G33240.2 MADF 60 108
AT1G33240.2 MADF 410 482
AT1G33240.3 MADF 76 147
AT1G33240.3 MADF 449 521

Links

Other MADF family TFs
Other Arabidopsis thaliana TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29576.m000223 Ricinus communis 29576.m000223 I 0.841
30068.m002635 Ricinus communis 30068.m002635 I 0.898
30206.m000769 Ricinus communis 30206.m000769 I 0.876
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.878
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.896
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.915
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.908
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.920
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.901
Bo2g091240 Brassica oleracea Bo2g091240 I 0.849
Bo6g049430 Brassica oleracea Bo6g049430 I 0.968
Bo6g083690 Brassica oleracea Bo6g083690 I 0.832
Bo6g120870 Brassica oleracea Bo6g120870 I 0.832
Bo8g027460 Brassica oleracea Bo8g027460 I 0.935
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.832
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.938
Bra003702 Brassica rapa Bra003702 I 0.837
Bra003703 Brassica rapa Bra003703 I 0.832
Bra008285 Brassica rapa Bra008285 I 0.819
Bra015716 Brassica rapa Bra015716 I 0.832
Bra036731 Brassica rapa Bra036731 I 0.931
Bra040010 Brassica rapa Bra040010 I 0.968
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.860
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.886
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.919
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.869
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.832
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.967
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.970
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.869
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.832
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.859
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.861
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.857
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.906
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.906
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.906
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.866
Ca_04385 Cicer arietinum Ca_04385 I 0.819
Ca_04386 Cicer arietinum Ca_04386 I 0.848
Ca_25135 Cicer arietinum Ca_25135 I 0.849
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.830
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.873
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.919
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.876
Cla001992 Citrullus lanatus Cla001992 I 0.836
Cla005046 Citrullus lanatus Cla005046 I 0.914
Cla007910 Citrullus lanatus Cla007910 I 0.853
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.923
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.836
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.861
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.852
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.884
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.887
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.888
F775_26337 Aegilops tauschii F775_26337 I 0.908
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.971
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.902
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.890
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.853
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.845
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.834
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.854
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.852
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.854
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.869
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.898
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.851
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.919
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.813
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.833
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.913
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.878
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.889
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.934
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.891
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.933
GSMUA_Achr2G00580_001 Musa acuminata GSMUA_Achr2G00580_001 N 0.837
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.933
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.934
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.907
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.862
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.888
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.893
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.891
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.908
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.893
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.880
MDP0000156139 Malus domestica MDP0000156139 I 0.875
MDP0000451038 Malus domestica MDP0000451038 I 0.909
MDP0000451107 Malus domestica MDP0000451107 I 0.867
MDP0000701272 Malus domestica MDP0000701272 I 0.898
mgf004276m Mimulus guttatus mgf004276m I 0.928
mgf021983m Mimulus guttatus mgf021983m I 0.836
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.930
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.871
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.881
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.840
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.851
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.845
OB02G33250 Oryza brachyantha OB02G33250 I 0.908
OB04G27270 Oryza brachyantha OB04G27270 I 0.920
OBART02G25970 Oryza barthii OBART02G25970 I 0.901
OBART04G20290 Oryza barthii OBART04G20290 I 0.920
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.908
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.897
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.920
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.901
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.913
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.897
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.901
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.897
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.920
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.908
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.901
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.899
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.920
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.911
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.937
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.830
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.873
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.876
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.901
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.886
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.908
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.897
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.920
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.901
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.895
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.912
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.900
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.877
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.849
PK24122.1 Cannabis sativa PK24122.1 I 0.848
PK26613.1 Cannabis sativa PK26613.1 I 0.828
Pm001889 Prunus mume Pm001889 I 0.812
Pm022570 Prunus mume Pm022570 I 0.894
Pm022572 Prunus mume Pm022572 I 0.856
Pm024289 Prunus mume Pm024289 I 0.911
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.860
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.911
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.840
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.853
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.853
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.837
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.913
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.861
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.911
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.856
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.878
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.898
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.831
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.824
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.860
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.910
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.845
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.831
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.848
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.845
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.911
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.895
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.913
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.832
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.845
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.851
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.851
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.845
Si012121m.g Setaria italica Si012121m.g I 0.920
Si016578m.g Setaria italica Si016578m.g I 0.879
Si034382m.g Setaria italica Si034382m.g I 0.910
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.849
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.884
TCM_001348 Theobroma cacao TCM_001348 I 0.858
TCM_015563 Theobroma cacao TCM_015563 I 0.906
TCM_035565 Theobroma cacao TCM_035565 I 0.860
TCM_035571 Theobroma cacao TCM_035571 I 0.825
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.969
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.832
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.897
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.908
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.908
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.897
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.831
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.897
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.832
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.884