ENSPPYG00000013578 (Pongo abelii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSPPYG00000013578 T328942_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BBX
M05763_2.00 		Homo sapiens
TGAWCDNYGWTCA
TGAWCRNHGWTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX 		0.741 1.000
BBX
M05764_2.00 		Homo sapiens
TGAACDNYGTTCA
TGAACRNHGTTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX 		0.741 1.000
Bbx
M00196_2.00 		Mus musculus
TTCATTGA
TCAATGAA		 PBM
Badis et al.(2009)
Bbx_3753 		0.708 0.986
bbx
M03975_2.00 		Drosophila melanogaster
NAACAATDNCATTGTTN
NAACAATGNHATTGTTN		 SELEX
Nitta et al.(2015)
bbx_1 		0.519 0.609
Cic
M00195_2.00 		Mus musculus
NNTGCTGABN
NVTCAGCANN		 PBM
Badis et al.(2009)
Cic_3454 		0.468 0.594
cic
M06452_2.00 		Drosophila melanogaster
YYCATTSA
TSAATGRR		 B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386 		0.430 0.478
gei-3
M00711_2.00 		Caenorhabditis elegans
NWNWMWDN
NHWKWNWN		 PBM
Narasimhan et al.(2015)
pTH10038 		0.429 0.493
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPPYP00000015181 Sox 80 148
ENSPPYP00000024711 Sox 80 148

Links

Other Sox family TFs
Other Pongo abelii TFs

285 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29613.m000367 Ricinus communis 29613.m000367 N 0.000
29838.m001672 Ricinus communis 29838.m001672 N 0.000
29838.m001673 Ricinus communis 29838.m001673 N 0.000
30099.m001671 Ricinus communis 30099.m001671 N 0.000
30099.m001672 Ricinus communis 30099.m001672 N 0.000
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.000
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.000
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.000
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.000
AGL61 Arabidopsis thaliana AT2G24840 N 0.000
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.000
AGL62 Arabidopsis thaliana AT5G60440 I 0.000
Bo1g112460 Brassica oleracea Bo1g112460 N 0.000
Bo5g113750 Brassica oleracea Bo5g113750 N 0.000
Bo8g099550 Brassica oleracea Bo8g099550 N 0.000
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.000
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.000
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.000
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.000
Bra002480 Brassica rapa Bra002480 N 0.000
Bra007829 Brassica rapa Bra007829 N 0.000
Bra022434 Brassica rapa Bra022434 N 0.000
Bra038225 Brassica rapa Bra038225 N 0.000
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.000
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.000
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.000
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.000
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.000
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.000
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.000
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.000
Ca_04659 Cicer arietinum Ca_04659 N 0.000
Ca_04660 Cicer arietinum Ca_04660 N 0.000
Ca_04661 Cicer arietinum Ca_04661 N 0.000
Ca_04665 Cicer arietinum Ca_04665 N 0.000
Ca_07607 Cicer arietinum Ca_07607 N 0.000
Ca_26354 Cicer arietinum Ca_26354 N 0.000
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.000
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.000
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.000
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.000
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.000
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.000
Cla006571 Citrullus lanatus Cla006571 N 0.000
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.000
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.000
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.000
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.000
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.000
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.000
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.000
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.000
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.000
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.000
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.000
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.000
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.000
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.000
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.000
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.000
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.000
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.000
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.000
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.000
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.000
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.000
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.000
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.000
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.000
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.000
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.000
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.000
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.000
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.000
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.000
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.000
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.000
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.000
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.000
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.000
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.000
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.000
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.000
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.000
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.000
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.000
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.000
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.000
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.000
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.000
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.000
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.000
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.000
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.000
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.000
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.000
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.000
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.000
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.000
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.000
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.000
MDP0000168914 Malus domestica MDP0000168914 N 0.000
MDP0000221590 Malus domestica MDP0000221590 N 0.000
MDP0000233925 Malus domestica MDP0000233925 N 0.000
MDP0000278770 Malus domestica MDP0000278770 N 0.000
MDP0000434703 Malus domestica MDP0000434703 I 0.000
mgf018529m Mimulus guttatus mgf018529m N 0.000
mgf024307m Mimulus guttatus mgf024307m N 0.000
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.000
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.000
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.000
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.000
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.000
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.000
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.000
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.000
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.000
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.000
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.000
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.000
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.000
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.000
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.000
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.000
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.000
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.000
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.000
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.000
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.000
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.000
Pm021018 Prunus mume Pm021018 N 0.000
Pm021070 Prunus mume Pm021070 N 0.000
Pm021071 Prunus mume Pm021071 N 0.000
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.000
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.000
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.000
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.000
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.000
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.000
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.000
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.000
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.000
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.000
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.000
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.000
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.000
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.000
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.000
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.000
TCM_006323 Theobroma cacao TCM_006323 N 0.000
TCM_040735 Theobroma cacao TCM_040735 N 0.000
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.000
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.000
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.000
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.000
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.000
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.000
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.000
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.000
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.000
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.000
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.000
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.000
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.000