ONIVA03G01170 (Oryza nivara)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 ONIVA03G01170 T249568_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.897 0.739
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.897 0.739
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ONIVA03G01170.1 MADF 80 151
ONIVA03G01170.1 MADF 438 509

Links

Other MADF family TFs
Other Oryza nivara TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.897
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.936
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.941
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.932
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.954
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.948
Bo2g091240 Brassica oleracea Bo2g091240 I 0.846
Bo6g049430 Brassica oleracea Bo6g049430 I 0.900
Bo6g083690 Brassica oleracea Bo6g083690 I 0.865
Bo6g120870 Brassica oleracea Bo6g120870 I 0.865
Bo8g027460 Brassica oleracea Bo8g027460 I 0.849
Bra003702 Brassica rapa Bra003702 I 0.832
Bra003703 Brassica rapa Bra003703 I 0.864
Bra008285 Brassica rapa Bra008285 I 0.873
Bra015716 Brassica rapa Bra015716 I 0.865
Bra036731 Brassica rapa Bra036731 I 0.849
Bra040010 Brassica rapa Bra040010 I 0.900
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.942
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.940
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.948
F775_26337 Aegilops tauschii F775_26337 I 0.956
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.897
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.864
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.891
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.860
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.871
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.860
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.956
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.918
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.901
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.915
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.920
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.869
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.882
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.866
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.956
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.917
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.914
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.967
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.959
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.943
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.954
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.946
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.934
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.870
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.853
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.847
OB02G33250 Oryza brachyantha OB02G33250 I 0.935
OB04G27270 Oryza brachyantha OB04G27270 I 0.956
OBART02G25970 Oryza barthii OBART02G25970 I 0.926
OBART04G20290 Oryza barthii OBART04G20290 I 0.954
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.932
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.969
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.954
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.948
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.952
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.969
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.948
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.954
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.932
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.948
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.932
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.956
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.942
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.926
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.965
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.932
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.971
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.954
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.948
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.865
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.881
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.954
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.894
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.873
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.876
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.901
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.947
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.894
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.954
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.884
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.849
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.924
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.915
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.956
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.865
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.918
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.901
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.901
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.918
Si012121m.g Setaria italica Si012121m.g I 0.952
Si016578m.g Setaria italica Si016578m.g I 0.911
Si034382m.g Setaria italica Si034382m.g I 0.964
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.865
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.904
TCM_001348 Theobroma cacao TCM_001348 I 0.871
TCM_015563 Theobroma cacao TCM_015563 I 0.948
TCM_035565 Theobroma cacao TCM_035565 I 0.877
TCM_035571 Theobroma cacao TCM_035571 I 0.888
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.933
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.950
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.956
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.933
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.900
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.942
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.854
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.901
Ca_04385 Cicer arietinum Ca_04385 I 0.874
Ca_04386 Cicer arietinum Ca_04386 I 0.865
Ca_25135 Cicer arietinum Ca_25135 I 0.851
Cla001992 Citrullus lanatus Cla001992 I 0.837
Cla005046 Citrullus lanatus Cla005046 I 0.951
Cla007910 Citrullus lanatus Cla007910 I 0.862
Pm001889 Prunus mume Pm001889 I 0.848
Pm022570 Prunus mume Pm022570 I 0.868
Pm022572 Prunus mume Pm022572 I 0.884
Pm024289 Prunus mume Pm024289 I 0.954
29576.m000223 Ricinus communis 29576.m000223 I 0.899
30068.m002635 Ricinus communis 30068.m002635 I 0.942
30206.m000769 Ricinus communis 30206.m000769 I 0.871
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.888
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.879
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.885
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.942
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.942
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.942
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.879
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.949
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.837
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.855
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.919
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.911
mgf004276m Mimulus guttatus mgf004276m I 0.910
mgf021983m Mimulus guttatus mgf021983m I 0.868
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.946
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.865
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.857
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.859
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.865
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.892
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.900
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.859
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.865
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.876
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.888
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.940
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.898
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.883
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.885
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.939
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.941
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.877
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.882
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.877
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.943
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.854
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.939
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.835
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.867
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.860
MDP0000156139 Malus domestica MDP0000156139 I 0.881
MDP0000451038 Malus domestica MDP0000451038 I 0.947
MDP0000451107 Malus domestica MDP0000451107 I 0.876
MDP0000701272 Malus domestica MDP0000701272 I 0.939
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.940
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.876
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.888
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.898
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.914
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.946
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.959
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.962
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.943
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.885
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.848
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.881
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.949
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.874
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.896
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.874
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.874
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.905
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.865
PK24122.1 Cannabis sativa PK24122.1 I 0.853
PK26613.1 Cannabis sativa PK26613.1 I 0.864
F775_24861 Aegilops tauschii F775_24861 N 0.887
mgf018892m Mimulus guttatus mgf018892m N 0.867