Ciclev10024246m.g (Citrus clementina)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Ciclev10024246m.g T344786_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.902 0.417
TB1
M01312_2.00 		Oryza sativa
GGSCCCCCYM
KRGGGGGSCC		 PBM
Lambert et al.(2019)
pTH8740 		0.843 0.424
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10024246m TCP 139 277

Links

Other TCP family TFs
Other Citrus clementina TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TB1 Oryza sativa OS03G0706500 D 0.843
PK12240.1 Cannabis sativa PK12240.1 D 0.902
AC190734.2_FG003 Zea mays AC190734.2_FG003 I 0.846
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.867
BRC2 Arabidopsis thaliana AT1G68800 I 0.923
BRC1 Arabidopsis thaliana AT3G18550 I 0.852
BGIOSGA013417 Oryza indica BGIOSGA013417 I 0.843
BGIOSGA030744 Oryza indica BGIOSGA030744 I 0.831
Bo1g117490 Brassica oleracea Bo1g117490 I 0.832
Bo2g061250 Brassica oleracea Bo2g061250 I 0.859
Bo3g071560 Brassica oleracea Bo3g071560 I 0.841
Bo6g103670 Brassica oleracea Bo6g103670 I 0.833
Bra001710 Brassica rapa Bra001710 I 0.855
Bra004097 Brassica rapa Bra004097 I 0.840
Bra034010 Brassica rapa Bra034010 I 0.827
Bra037579 Brassica rapa Bra037579 I 0.832
Bra038350 Brassica rapa Bra038350 I 0.859
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I 0.848
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I 0.833
F775_01923 Aegilops tauschii F775_01923 I 0.827
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.875
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.923
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.888
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.889
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.833
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.829
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.910
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.845
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.828
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.853
GRMZM2G062711 Zea mays GRMZM2G062711 I 0.836
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.827
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.869
GRMZM2G166687 Zea mays GRMZM2G166687 I 0.826
GSMUA_Achr10G25520_001 Musa acuminata GSMUA_Achr10G25520_001 I 0.878
GSMUA_Achr2G21050_001 Musa acuminata GSMUA_Achr2G21050_001 I 0.830
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.881
LPERR03G25950 Leersia perrieri LPERR03G25950 I 0.826
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.826
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.827
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.843
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.882
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.871
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.876
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.837
OBART09G10040 Oryza barthii OBART09G10040 I 0.831
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I 0.843
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.831
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.838
ONIVA03G32600 Oryza nivara ONIVA03G32600 I 0.843
ONIVA09G09540 Oryza nivara ONIVA09G09540 I 0.831
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.863
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.827
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I 0.843
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I 0.831
OS09G0410500 Oryza sativa OS09G0410500 I 0.831
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.840
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.872
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.867
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.866
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.873
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.898
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.896
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.886
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.909
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.861
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.853
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.883
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.827
Si033183m.g Setaria italica Si033183m.g I 0.839
Si038692m.g Setaria italica Si038692m.g I 0.823
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.872
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.876
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.852
TCM_011874 Theobroma cacao TCM_011874 I 0.872
TCM_012252 Theobroma cacao TCM_012252 I 0.933
TCM_019518 Theobroma cacao TCM_019518 I 0.836
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.876
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.876
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.876
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.836
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.869
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.837
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.876
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.847
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.865
Cla002355 Citrullus lanatus Cla002355 I 0.871
Cla007227 Citrullus lanatus Cla007227 I 0.839
Cla016709 Citrullus lanatus Cla016709 I 0.870
Pm015499 Prunus mume Pm015499 I 0.858
Pm029002 Prunus mume Pm029002 I 0.861
Pm030202 Prunus mume Pm030202 I 0.909
29738.m001041 Ricinus communis 29738.m001041 I 0.858
30167.m000856 Ricinus communis 30167.m000856 I 0.882
30174.m008721 Ricinus communis 30174.m008721 I 0.896
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.894
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.869
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.900
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.891
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.871
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.891
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.912
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.902
mgf019480m Mimulus guttatus mgf019480m I 0.836
mgf022233m Mimulus guttatus mgf022233m I 0.852
mgf024687m Mimulus guttatus mgf024687m I 0.914
mgf026636m Mimulus guttatus mgf026636m I 0.868
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.899
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.835
Bostr.19424s0807 Boechera stricta Bostr.19424s0807 I 0.848
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.912
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.880
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.860
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.915
Cagra.1681s0023 Capsella grandiflora Cagra.1681s0023 I 0.860
Cagra.2935s0020 Capsella grandiflora Cagra.2935s0020 I 0.831
Carubv10005003m.g Capsella rubella Carubv10005003m.g I 0.831
Carubv10013748m.g Capsella rubella Carubv10013748m.g I 0.860
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.915
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.861
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.865
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.924
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.826
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.860
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.866
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.826
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.898
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.837
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.903
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.867
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.914
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.829
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.905
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.836
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.917
MDP0000173048 Malus domestica MDP0000173048 I 0.880
MDP0000272980 Malus domestica MDP0000272980 I 0.907
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.983
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.865
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.842
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.833
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I 0.830
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.887
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.874
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.899
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.902
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.884
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.884
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.829
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.848
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.831
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.867
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.852
LjSGA_018294.2 Lotus japonicus LjSGA_018294.2 I 0.867
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.842
Bo5g117410 Brassica oleracea Bo5g117410 N 0.860
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.850
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.872
BRC1 Arabidopsis lyrata scaffold_302193.1 N 0.838
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.871
Cla018797 Citrullus lanatus Cla018797 N 0.832
Cla019282 Citrullus lanatus Cla019282 N 0.902
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.897
Cucsa.198860 Cucumis sativus Cucsa.198860 N 0.879
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.885
MDP0000219838 Malus domestica MDP0000219838 N 0.877
MDP0000224810 Malus domestica MDP0000224810 N 0.904
Thhalv10021948m.g Eutrema salsugineum Thhalv10021948m.g N 0.849
PK16683.1 Cannabis sativa PK16683.1 N 0.849