cassava2301.valid.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava2301.valid.m1 T006857_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9XHD4_PETHY
M09737_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2A_01 		0.853 0.969
Q9XHD3_PETHY
M09736_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2B_01 		0.825 0.918
RAP2.7
M00845_2.00 		Arabidopsis thaliana
KRCGRGGD
HCCYCGYM		 PBM
Franco-Zorrilla et al.(2014)
TOE1 		0.822 0.918
P93632_MAIZE
M09712_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GL15_01 		0.807 0.857
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava2301.valid.m1 AP2 161 210
cassava2301.valid.m1 AP2 253 304

Links

Other AP2 family TFs
Other Manihot esculenta TFs

238 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29169.m000017 Ricinus communis 29169.m000017 I 0.869
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.869
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.868
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.868
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.859
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.854
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.854
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.854
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.854
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.854
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.854
Cla000716 Citrullus lanatus Cla000716 I 0.854
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.854
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.854
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.854
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.854
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.854
PK02403.1 Cannabis sativa PK02403.1 I 0.854
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.854
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.854
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.854
Bra011741 Brassica rapa Bra011741 I 0.853
29805.m001494 Ricinus communis 29805.m001494 I 0.853
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.853
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.853
Ca_09295 Cicer arietinum Ca_09295 I 0.853
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.853
AP2 Arabidopsis thaliana AT4G36920 I 0.853
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.853
mgf009315m Mimulus guttatus mgf009315m I 0.853
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.853
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.853
Bo7g118400 Brassica oleracea Bo7g118400 I 0.853
Bo1g004960 Brassica oleracea Bo1g004960 I 0.853
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.853
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.853
Bra017809 Brassica rapa Bra017809 I 0.853
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.852
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.852
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.851
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.851
TCM_000665 Theobroma cacao TCM_000665 I 0.851
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.848
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.847
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.847
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.846
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.845
TCM_022077 Theobroma cacao TCM_022077 I 0.845
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.845
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.845
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.845
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.845
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.845
MDP0000200319 Malus domestica MDP0000200319 I 0.845
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.845
Pm002492 Prunus mume Pm002492 I 0.845
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.845
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.844
PK07183.1 Cannabis sativa PK07183.1 I 0.844
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.844
OS05G0121600 Oryza sativa OS05G0121600 I 0.844
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.844
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.844
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.844
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.844
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.844
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.844
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.844
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.844
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.844
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.844
28752.m000339 Ricinus communis 28752.m000339 I 0.844
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.844
Ca_02499 Cicer arietinum Ca_02499 I 0.844
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.844
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.844
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.844
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.844
Si025305m.g Setaria italica Si025305m.g I 0.844
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.844
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.844
Si012635m.g Setaria italica Si012635m.g I 0.844
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.844
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.844
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.844
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.844
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.844
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.844
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.844
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.844
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.843
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.843
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.843
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.842
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.842
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.842
TCM_042000 Theobroma cacao TCM_042000 I 0.842
F775_32962 Aegilops tauschii F775_32962 I 0.842
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.842
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.842
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.842
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.841
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.841
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.841
mgf021945m Mimulus guttatus mgf021945m I 0.841
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.840
Pm000974 Prunus mume Pm000974 I 0.840
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.840
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.840
MDP0000181606 Malus domestica MDP0000181606 I 0.840
Cla018124 Citrullus lanatus Cla018124 I 0.840
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.840
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.839
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.839
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.839
Pm030172 Prunus mume Pm030172 I 0.838
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.838
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.838
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.838
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.838
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.837
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.836
MDP0000137561 Malus domestica MDP0000137561 I 0.836
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.833
Ca_14618 Cicer arietinum Ca_14618 I 0.832
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.831
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.831
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.831
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.831
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.831
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.831
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.831
OB06G29960 Oryza brachyantha OB06G29960 I 0.831
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.830
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.828
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.828
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.828
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.827
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.827
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.827
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.827
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.827
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.827
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.827
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.827
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.827
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.827
Ca_12010 Cicer arietinum Ca_12010 I 0.827
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.825
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.825
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.824
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.824
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.824
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.822
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.822
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.822
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.822
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.822
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.821
Bo4g070350 Brassica oleracea Bo4g070350 I 0.821
Bra011939 Brassica rapa Bra011939 I 0.821
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.820
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.820
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.820
OBART07G08110 Oryza barthii OBART07G08110 I 0.820
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.820
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.820
OS07G0235800 Oryza sativa OS07G0235800 I 0.820
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.820
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.820
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.820
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.820
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.820
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.820
Si029636m.g Setaria italica Si029636m.g I 0.819
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.819
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.819
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.819
OB03G45870 Oryza brachyantha OB03G45870 I 0.819
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.819
mgf005133m Mimulus guttatus mgf005133m I 0.819
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.819
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.819
mgf010466m Mimulus guttatus mgf010466m I 0.819
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.818
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.817
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.816
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.816
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.816
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.816
Si036068m.g Setaria italica Si036068m.g I 0.816
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.816
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.816
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.816
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.816
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.813
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.813
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.813
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.812
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.812
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.809
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.807
P93632_MAIZE Zea mays P93632_MAIZE D 0.807
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.807
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.805
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.804
TOE3 Arabidopsis thaliana AT5G67180 I 0.804
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.804
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.804
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.804
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.804
MDP0000163645 Malus domestica MDP0000163645 I 0.802
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.801
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.801
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.800
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.799
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.798
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.798
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.797
Bo7g064000 Brassica oleracea Bo7g064000 I 0.797
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.797
Bra012139 Brassica rapa Bra012139 I 0.797
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.796
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.796
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.792
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.788
Cla018549 Citrullus lanatus Cla018549 I 0.788
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.786
OS03G0818800 Oryza sativa OS03G0818800 I 0.784
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.781
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.781
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.780
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.780
Cla020549 Citrullus lanatus Cla020549 I 0.776
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.769
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.712
Si006371m.g Setaria italica Si006371m.g I 0.699
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.693