Gorai.004G002100 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.004G002100 T008512_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD

HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.698 0.972
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.857 0.969
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.840 0.949
P93632_MAIZE
M09712_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.811 0.847
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G002100.1 AP2 147 196
Gorai.004G002100.1 AP2 239 290
Gorai.004G002100.2 AP2 147 196
Gorai.004G002100.2 AP2 239 290
Gorai.004G002100.3 AP2 147 196
Gorai.004G002100.3 AP2 239 290
Gorai.004G002100.4 AP2 147 196
Gorai.004G002100.4 AP2 239 263
Gorai.004G002100.5 AP2 147 196
Gorai.004G002100.5 AP2 239 290

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

243 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.870
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.870
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.870
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.870
F775_32962 Aegilops tauschii F775_32962 I 0.870
TCM_042000 Theobroma cacao TCM_042000 I 0.870
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.869
mgf021945m Mimulus guttatus mgf021945m I 0.867
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.861
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.861
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.861
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.861
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.861
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.861
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.861
OS05G0121600 Oryza sativa OS05G0121600 I 0.861
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.861
Si025305m.g Setaria italica Si025305m.g I 0.861
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.861
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.861
Ca_02499 Cicer arietinum Ca_02499 I 0.861
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.861
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.861
28752.m000339 Ricinus communis 28752.m000339 I 0.861
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.861
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.861
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.861
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.861
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.861
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.861
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.860
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.860
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.860
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.860
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.860
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.860
TCM_022077 Theobroma cacao TCM_022077 I 0.860
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.860
MDP0000200319 Malus domestica MDP0000200319 I 0.860
Pm002492 Prunus mume Pm002492 I 0.860
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.860
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.858
29805.m001494 Ricinus communis 29805.m001494 I 0.858
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.858
PK07183.1 Cannabis sativa PK07183.1 I 0.858
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.858
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.858
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.857
Ca_09295 Cicer arietinum Ca_09295 I 0.857
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.857
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.857
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.857
Bra017809 Brassica rapa Bra017809 I 0.857
Bo1g004960 Brassica oleracea Bo1g004960 I 0.857
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.857
Bra011741 Brassica rapa Bra011741 I 0.857
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.857
Bo7g118400 Brassica oleracea Bo7g118400 I 0.857
AP2 Arabidopsis thaliana AT4G36920 I 0.857
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.857
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.857
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.857
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.856
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.856
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.856
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.856
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.856
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.856
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.856
MDP0000181606 Malus domestica MDP0000181606 I 0.856
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.856
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.856
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.856
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.856
Cla000716 Citrullus lanatus Cla000716 I 0.856
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.856
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.856
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.856
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.856
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.856
PK02403.1 Cannabis sativa PK02403.1 I 0.856
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.856
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.856
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.856
Pm000974 Prunus mume Pm000974 I 0.856
mgf009315m Mimulus guttatus mgf009315m I 0.856
TCM_000665 Theobroma cacao TCM_000665 I 0.853
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.853
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.853
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.852
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.852
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.852
Cla018124 Citrullus lanatus Cla018124 I 0.851
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.851
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.850
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.848
Si012635m.g Setaria italica Si012635m.g I 0.848
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.848
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.848
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.848
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.848
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.848
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.848
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.848
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.848
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.848
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.847
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.847
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.847
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.846
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.846
29169.m000017 Ricinus communis 29169.m000017 I 0.846
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.844
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.844
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.844
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.843
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.842
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.842
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.841
MDP0000137561 Malus domestica MDP0000137561 I 0.841
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.841
Ca_12010 Cicer arietinum Ca_12010 I 0.841
Ca_14618 Cicer arietinum Ca_14618 I 0.840
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.840
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.840
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.840
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.840
Pm030172 Prunus mume Pm030172 I 0.840
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.839
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.839
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.838
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.838
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.838
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.838
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.838
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.838
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.838
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.837
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.836
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.836
Bo4g070350 Brassica oleracea Bo4g070350 I 0.836
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.836
Bra011939 Brassica rapa Bra011939 I 0.836
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.836
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.836
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.836
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.835
OBART07G08110 Oryza barthii OBART07G08110 I 0.835
OB06G29960 Oryza brachyantha OB06G29960 I 0.835
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.835
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.835
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.835
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.835
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.835
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.835
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.835
OS07G0235800 Oryza sativa OS07G0235800 I 0.835
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.835
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.835
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.835
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.835
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.835
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.835
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.835
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.834
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.834
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.834
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.834
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.834
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.834
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.833
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.833
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.833
Si036068m.g Setaria italica Si036068m.g I 0.833
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.833
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.833
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.833
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.833
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.833
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.831
Si029636m.g Setaria italica Si029636m.g I 0.831
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.831
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.831
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.831
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.829
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.829
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.829
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.828
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.827
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.826
OB03G45870 Oryza brachyantha OB03G45870 I 0.826
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.825
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.824
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.824
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.822
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.821
mgf005133m Mimulus guttatus mgf005133m I 0.821
mgf010466m Mimulus guttatus mgf010466m I 0.821
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.820
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.820
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.820
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.819
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.818
MDP0000163645 Malus domestica MDP0000163645 I 0.817
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.817
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.816
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.813
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.811
P93632_MAIZE Zea mays P93632_MAIZE D 0.811
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.811
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.810
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.810
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.806
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.806
TOE3 Arabidopsis thaliana AT5G67180 I 0.806
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.806
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.806
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.805
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.805
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.804
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.804
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.803
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.803
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.801
Bo7g064000 Brassica oleracea Bo7g064000 I 0.800
Bra012139 Brassica rapa Bra012139 I 0.800
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.797
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.797
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.796
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.795
OS03G0818800 Oryza sativa OS03G0818800 I 0.790
Cla020549 Citrullus lanatus Cla020549 I 0.789
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.785
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.782
Cla018549 Citrullus lanatus Cla018549 I 0.777
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.713
Si006371m.g Setaria italica Si006371m.g I 0.702
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.699
Solyc11g072600.1 Solanum lycopersicum Solyc11g072600.1 I 0.698
PK14490.1 Cannabis sativa PK14490.1 I 0.698
cassava42433.valid.m1 Manihot esculenta cassava42433.valid.m1 N 0.687
POPTR_0010s22320 Populus trichocarpa POPTR_0010s22320 I 0.684