Lus10036141.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10036141.g T008905_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9XHD4_PETHY
M09737_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2A_01 		0.795 0.845
RAP2.7
M00845_2.00 		Arabidopsis thaliana
KRCGRGGD
HCCYCGYM		 PBM
Franco-Zorrilla et al.(2014)
TOE1 		0.793 0.874
Q9XHD3_PETHY
M09736_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2B_01 		0.781 0.835
P93632_MAIZE
M09712_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GL15_01 		0.749 0.728
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10036141 AP2 164 230
Lus10036141 AP2 273 324

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

236 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.813
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.805
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.805
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.802
Si025305m.g Setaria italica Si025305m.g I 0.802
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.802
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.802
Ca_02499 Cicer arietinum Ca_02499 I 0.802
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.802
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.802
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.802
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.802
OS05G0121600 Oryza sativa OS05G0121600 I 0.802
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.802
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.802
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.802
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.802
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.802
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.802
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.802
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.802
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.802
28752.m000339 Ricinus communis 28752.m000339 I 0.802
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.802
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.802
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.801
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.801
Pm002492 Prunus mume Pm002492 I 0.801
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.801
TCM_022077 Theobroma cacao TCM_022077 I 0.801
MDP0000200319 Malus domestica MDP0000200319 I 0.801
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.801
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.801
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.801
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.801
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.801
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.799
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.799
PK07183.1 Cannabis sativa PK07183.1 I 0.799
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.799
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.799
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.799
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.797
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.797
Pm000974 Prunus mume Pm000974 I 0.797
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.797
MDP0000181606 Malus domestica MDP0000181606 I 0.797
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.797
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.796
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.796
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.796
Cla018124 Citrullus lanatus Cla018124 I 0.796
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.796
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.796
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.796
TCM_042000 Theobroma cacao TCM_042000 I 0.796
F775_32962 Aegilops tauschii F775_32962 I 0.796
Bra011741 Brassica rapa Bra011741 I 0.795
Bo7g118400 Brassica oleracea Bo7g118400 I 0.795
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.795
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.795
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.795
Ca_09295 Cicer arietinum Ca_09295 I 0.795
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.795
29805.m001494 Ricinus communis 29805.m001494 I 0.795
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.795
AP2 Arabidopsis thaliana AT4G36920 I 0.795
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.795
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.795
Bra017809 Brassica rapa Bra017809 I 0.795
Bo1g004960 Brassica oleracea Bo1g004960 I 0.795
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.795
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.795
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.795
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.794
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.794
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.794
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.794
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.794
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.794
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.794
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.794
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.794
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.794
Cla000716 Citrullus lanatus Cla000716 I 0.794
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.794
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.794
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.794
PK02403.1 Cannabis sativa PK02403.1 I 0.794
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.794
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.794
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.793
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.793
mgf009315m Mimulus guttatus mgf009315m I 0.793
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.793
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.793
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.793
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.793
mgf021945m Mimulus guttatus mgf021945m I 0.793
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.791
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.791
TCM_000665 Theobroma cacao TCM_000665 I 0.791
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.789
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.789
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.788
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.786
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.786
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.785
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.785
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.785
Si012635m.g Setaria italica Si012635m.g I 0.785
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.785
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.785
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.785
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.785
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.785
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.785
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.785
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.785
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.785
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.784
Bo4g070350 Brassica oleracea Bo4g070350 I 0.784
Bra011939 Brassica rapa Bra011939 I 0.784
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.784
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.784
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.783
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.783
29169.m000017 Ricinus communis 29169.m000017 I 0.783
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.783
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.783
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.783
Ca_12010 Cicer arietinum Ca_12010 I 0.782
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.782
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.782
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.781
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.781
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.781
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.780
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.780
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.780
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.780
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.780
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.780
OS07G0235800 Oryza sativa OS07G0235800 I 0.780
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.780
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.780
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.780
OBART07G08110 Oryza barthii OBART07G08110 I 0.780
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.780
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.779
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.779
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.779
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.779
MDP0000137561 Malus domestica MDP0000137561 I 0.778
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.778
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.777
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.777
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.777
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.777
Si036068m.g Setaria italica Si036068m.g I 0.777
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.777
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.777
Pm030172 Prunus mume Pm030172 I 0.777
Ca_14618 Cicer arietinum Ca_14618 I 0.777
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.777
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.777
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.776
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.776
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.776
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.776
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.776
Si029636m.g Setaria italica Si029636m.g I 0.776
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.775
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.775
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.775
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.775
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.775
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.775
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.774
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.774
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.774
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.774
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.774
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.773
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.773
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.772
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.772
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.772
OB06G29960 Oryza brachyantha OB06G29960 I 0.772
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.772
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.772
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.772
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.771
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.770
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.769
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.768
OB03G45870 Oryza brachyantha OB03G45870 I 0.767
Cla018549 Citrullus lanatus Cla018549 I 0.766
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.764
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.764
MDP0000163645 Malus domestica MDP0000163645 I 0.763
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.763
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.763
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.761
mgf005133m Mimulus guttatus mgf005133m I 0.759
mgf010466m Mimulus guttatus mgf010466m I 0.759
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.758
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.758
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.755
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.753
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.752
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.750
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.750
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.750
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.750
P93632_MAIZE Zea mays P93632_MAIZE D 0.749
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.749
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.749
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.747
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.747
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.744
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.743
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.743
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.743
TOE3 Arabidopsis thaliana AT5G67180 I 0.743
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.743
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.742
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.742
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.738
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.738
Cla020549 Citrullus lanatus Cla020549 I 0.737
Bo7g064000 Brassica oleracea Bo7g064000 I 0.737
Bra012139 Brassica rapa Bra012139 I 0.737
OS03G0818800 Oryza sativa OS03G0818800 I 0.733
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.726
Si006371m.g Setaria italica Si006371m.g I 0.695