Lus10004990.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10004990.g T008742_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.830 0.969
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.800 0.908
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD

HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.798 0.918
P93632_MAIZE
M09712_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.788 0.857
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10004990 AP2 160 209
Lus10004990 AP2 252 303

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.844
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.844
29169.m000017 Ricinus communis 29169.m000017 I 0.843
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.843
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.840
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.834
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.833
Bra017809 Brassica rapa Bra017809 I 0.830
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.830
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.830
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.830
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.830
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.830
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.830
Bra011741 Brassica rapa Bra011741 I 0.830
Bo1g004960 Brassica oleracea Bo1g004960 I 0.830
Ca_09295 Cicer arietinum Ca_09295 I 0.830
AP2 Arabidopsis thaliana AT4G36920 I 0.830
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.830
Bo7g118400 Brassica oleracea Bo7g118400 I 0.830
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.830
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.829
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.829
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.829
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.829
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.829
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.829
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.829
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.829
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.829
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.829
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.829
Cla000716 Citrullus lanatus Cla000716 I 0.829
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.829
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.829
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.829
PK02403.1 Cannabis sativa PK02403.1 I 0.829
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.829
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.828
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.828
mgf009315m Mimulus guttatus mgf009315m I 0.828
29805.m001494 Ricinus communis 29805.m001494 I 0.827
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.826
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.826
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.826
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.826
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.826
TCM_000665 Theobroma cacao TCM_000665 I 0.826
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.826
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.826
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.826
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.826
Si012635m.g Setaria italica Si012635m.g I 0.826
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.826
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.826
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.825
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.824
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.822
OS05G0121600 Oryza sativa OS05G0121600 I 0.821
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.821
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.821
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.821
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.821
Ca_02499 Cicer arietinum Ca_02499 I 0.821
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.821
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.821
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.821
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.821
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.821
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.821
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.821
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.821
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.821
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.821
28752.m000339 Ricinus communis 28752.m000339 I 0.821
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.821
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.821
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.821
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.821
Si025305m.g Setaria italica Si025305m.g I 0.821
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.821
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.821
Pm002492 Prunus mume Pm002492 I 0.820
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.820
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.820
TCM_022077 Theobroma cacao TCM_022077 I 0.820
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.820
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.820
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.820
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.820
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.820
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.820
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.820
MDP0000200319 Malus domestica MDP0000200319 I 0.820
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.820
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.820
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.819
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.819
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.819
TCM_042000 Theobroma cacao TCM_042000 I 0.819
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.819
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.819
F775_32962 Aegilops tauschii F775_32962 I 0.819
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.818
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.818
mgf021945m Mimulus guttatus mgf021945m I 0.818
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.818
PK07183.1 Cannabis sativa PK07183.1 I 0.818
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.817
MDP0000181606 Malus domestica MDP0000181606 I 0.816
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.816
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.816
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.816
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.816
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.816
Pm000974 Prunus mume Pm000974 I 0.816
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.814
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.814
Cla018124 Citrullus lanatus Cla018124 I 0.814
MDP0000137561 Malus domestica MDP0000137561 I 0.813
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.812
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.812
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.812
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.812
Pm030172 Prunus mume Pm030172 I 0.812
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.812
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.811
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.809
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.809
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.809
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.809
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.809
OB06G29960 Oryza brachyantha OB06G29960 I 0.809
Ca_14618 Cicer arietinum Ca_14618 I 0.809
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.808
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.807
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.807
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.805
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.804
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.804
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.803
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.803
Ca_12010 Cicer arietinum Ca_12010 I 0.803
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.803
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.803
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.803
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.803
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.803
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.802
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.802
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.801
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.800
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.800
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.799
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.798
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.798
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.798
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.798
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.798
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.798
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.798
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.798
Bo4g070350 Brassica oleracea Bo4g070350 I 0.797
Bra011939 Brassica rapa Bra011939 I 0.797
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.797
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.796
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.796
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.796
OB03G45870 Oryza brachyantha OB03G45870 I 0.795
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.795
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.795
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.795
OBART07G08110 Oryza barthii OBART07G08110 I 0.795
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.795
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.795
OS07G0235800 Oryza sativa OS07G0235800 I 0.795
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.795
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.795
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.795
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.795
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.795
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.795
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.795
mgf010466m Mimulus guttatus mgf010466m I 0.794
Si029636m.g Setaria italica Si029636m.g I 0.794
mgf005133m Mimulus guttatus mgf005133m I 0.794
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.794
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.794
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.794
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.793
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.793
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.793
Si036068m.g Setaria italica Si036068m.g I 0.793
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.793
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.793
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.793
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.793
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.791
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.791
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.790
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.789
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.788
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.788
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.788
P93632_MAIZE Zea mays P93632_MAIZE D 0.788
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.787
Cla018549 Citrullus lanatus Cla018549 I 0.786
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.786
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.784
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.782
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.781
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.781
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.781
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.781
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.779
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.778
TOE3 Arabidopsis thaliana AT5G67180 I 0.778
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.778
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.778
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.778
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.778
MDP0000163645 Malus domestica MDP0000163645 I 0.777
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.777
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.775
Bra012139 Brassica rapa Bra012139 I 0.774
Bo7g064000 Brassica oleracea Bo7g064000 I 0.774
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.772
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.764
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.763
OS03G0818800 Oryza sativa OS03G0818800 I 0.761
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.757
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.757
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.756
Cla020549 Citrullus lanatus Cla020549 I 0.751
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.750
Si006371m.g Setaria italica Si006371m.g I 0.700
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.685