Ciclev10011588m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10011588m.g T007991_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9XHD4_PETHY
M09737_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2A_01 		0.784 0.838
Q9XHD3_PETHY
M09736_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2B_01 		0.770 0.818
RAP2.7
M00845_2.00 		Arabidopsis thaliana
KRCGRGGD
HCCYCGYM		 PBM
Franco-Zorrilla et al.(2014)
TOE1 		0.768 0.828
P93632_MAIZE
M09712_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GL15_01 		0.754 0.778
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10011588m AP2 153 202
Ciclev10011588m AP2 246 297
Ciclev10011591m AP2 153 202
Ciclev10011591m AP2 246 297

Links

Other AP2 family TFs
Other Citrus clementina TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si012635m.g Setaria italica Si012635m.g I 0.794
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.794
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.794
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.794
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.794
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.794
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.794
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.794
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.794
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.794
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.794
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.794
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.793
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.791
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.791
OS05G0121600 Oryza sativa OS05G0121600 I 0.791
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.791
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.791
Ca_02499 Cicer arietinum Ca_02499 I 0.791
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.791
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.791
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.791
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.791
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.791
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.791
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.791
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.791
28752.m000339 Ricinus communis 28752.m000339 I 0.791
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.791
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.791
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.791
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.791
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.791
Si025305m.g Setaria italica Si025305m.g I 0.791
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.791
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.791
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.791
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.791
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.790
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.790
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.790
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.790
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.790
MDP0000200319 Malus domestica MDP0000200319 I 0.790
Pm002492 Prunus mume Pm002492 I 0.790
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.790
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.790
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.790
TCM_022077 Theobroma cacao TCM_022077 I 0.790
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.790
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.788
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.788
PK07183.1 Cannabis sativa PK07183.1 I 0.788
Cla018124 Citrullus lanatus Cla018124 I 0.788
TCM_000665 Theobroma cacao TCM_000665 I 0.786
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.786
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.786
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.786
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.786
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.786
MDP0000181606 Malus domestica MDP0000181606 I 0.786
Pm000974 Prunus mume Pm000974 I 0.786
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.785
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.785
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.785
TCM_042000 Theobroma cacao TCM_042000 I 0.785
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.785
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.785
F775_32962 Aegilops tauschii F775_32962 I 0.785
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.784
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.784
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.784
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.784
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.784
AP2 Arabidopsis thaliana AT4G36920 I 0.784
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.784
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.784
Bra011741 Brassica rapa Bra011741 I 0.784
Bo7g118400 Brassica oleracea Bo7g118400 I 0.784
29805.m001494 Ricinus communis 29805.m001494 I 0.784
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.784
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.784
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.784
Ca_09295 Cicer arietinum Ca_09295 I 0.784
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.784
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.784
Bra017809 Brassica rapa Bra017809 I 0.784
Bo1g004960 Brassica oleracea Bo1g004960 I 0.784
Cla000716 Citrullus lanatus Cla000716 I 0.783
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.783
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.783
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.783
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.783
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.783
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.783
PK02403.1 Cannabis sativa PK02403.1 I 0.783
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.783
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.783
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.783
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.783
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.783
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.783
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.783
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.783
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.783
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.783
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.782
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.782
mgf021945m Mimulus guttatus mgf021945m I 0.782
mgf009315m Mimulus guttatus mgf009315m I 0.782
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.780
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.779
MDP0000163645 Malus domestica MDP0000163645 I 0.777
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.776
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.776
Si036068m.g Setaria italica Si036068m.g I 0.776
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.776
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.776
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.776
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.775
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.775
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.775
OB06G29960 Oryza brachyantha OB06G29960 I 0.775
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.775
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.775
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.775
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.774
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.774
Ca_12010 Cicer arietinum Ca_12010 I 0.773
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.773
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.773
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.773
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.772
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.772
29169.m000017 Ricinus communis 29169.m000017 I 0.772
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.772
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.772
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.771
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.771
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.771
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.771
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.771
OBART07G08110 Oryza barthii OBART07G08110 I 0.771
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.771
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.771
OS07G0235800 Oryza sativa OS07G0235800 I 0.771
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.771
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.771
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.771
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.770
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.770
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.770
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.769
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.769
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.768
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.768
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.768
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.768
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.768
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.768
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.768
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.768
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.768
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.768
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.768
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.768
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.768
OB03G45870 Oryza brachyantha OB03G45870 I 0.768
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.768
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.768
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.768
Si029636m.g Setaria italica Si029636m.g I 0.768
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.767
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.767
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.767
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.767
MDP0000137561 Malus domestica MDP0000137561 I 0.767
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.767
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.767
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.767
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.767
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.767
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.767
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.766
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.766
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.766
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.766
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.766
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.766
Bo4g070350 Brassica oleracea Bo4g070350 I 0.766
Bra011939 Brassica rapa Bra011939 I 0.766
Ca_14618 Cicer arietinum Ca_14618 I 0.766
Pm030172 Prunus mume Pm030172 I 0.766
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.765
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.765
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.763
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.763
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.763
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.761
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.760
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.758
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.757
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.757
TOE3 Arabidopsis thaliana AT5G67180 I 0.756
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.756
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.756
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.756
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.756
P93632_MAIZE Zea mays P93632_MAIZE D 0.754
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.754
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.754
Bo7g064000 Brassica oleracea Bo7g064000 I 0.753
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.753
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.753
Bra012139 Brassica rapa Bra012139 I 0.753
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.752
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.752
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.750
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.750
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.750
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.750
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.749
mgf010466m Mimulus guttatus mgf010466m I 0.748
mgf005133m Mimulus guttatus mgf005133m I 0.748
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.746
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.744
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.744
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.742
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.733
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.731
Cla020549 Citrullus lanatus Cla020549 I 0.728
OS03G0818800 Oryza sativa OS03G0818800 I 0.727
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.726
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.712
Cla018549 Citrullus lanatus Cla018549 I 0.707
orange1.1g039174m.g Citrus sinensis orange1.1g039174m.g N 0.704