LotgiG156153 (Lottia gigantea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 LotgiG156153 T220109_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.739 0.370
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.739 0.370
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.739 0.370
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.739 0.370
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.739 0.370
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.739 0.370
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.739 0.370
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.739 0.370
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.739 0.370
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.727 0.261
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.727 0.261
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.727 0.261
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LotgiP156153 Homeodomain 243 288

Links

Other Homeodomain family TFs
Other Lottia gigantea TFs

1217 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29576.m000223 Ricinus communis 29576.m000223 I 0.000
30068.m002635 Ricinus communis 30068.m002635 I 0.000
30206.m000769 Ricinus communis 30206.m000769 I 0.000
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.000
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.000
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.000
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.000
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.000
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.000
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.000
Bo2g091240 Brassica oleracea Bo2g091240 I 0.000
Bo6g049430 Brassica oleracea Bo6g049430 I 0.000
Bo6g083690 Brassica oleracea Bo6g083690 I 0.000
Bo6g120870 Brassica oleracea Bo6g120870 I 0.000
Bo8g027460 Brassica oleracea Bo8g027460 I 0.000
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.000
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.000
Bra003702 Brassica rapa Bra003702 I 0.000
Bra003703 Brassica rapa Bra003703 I 0.000
Bra008285 Brassica rapa Bra008285 I 0.000
Bra015716 Brassica rapa Bra015716 I 0.000
Bra036731 Brassica rapa Bra036731 I 0.000
Bra040010 Brassica rapa Bra040010 I 0.000
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.000
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.000
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.000
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.000
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.000
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.000
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.000
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.000
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.000
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.000
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.000
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.000
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.000
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.000
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.000
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.000
Ca_04385 Cicer arietinum Ca_04385 I 0.000
Ca_04386 Cicer arietinum Ca_04386 I 0.000
Ca_25135 Cicer arietinum Ca_25135 I 0.000
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.000
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.000
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.000
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.000
Cla001992 Citrullus lanatus Cla001992 I 0.000
Cla005046 Citrullus lanatus Cla005046 I 0.000
Cla007910 Citrullus lanatus Cla007910 I 0.000
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.000
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.000
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.000
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.000
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.000
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.000
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.000
F775_24861 Aegilops tauschii F775_24861 N 0.000
F775_26337 Aegilops tauschii F775_26337 I 0.000
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.000
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.000
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.000
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.000
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.000
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.000
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.000
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.000
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.000
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.000
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.000
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.000
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.000
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.000
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.000
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.000
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.000
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.000
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.000
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.000
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.000
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.000
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.000
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.000
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.000
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.000
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.000
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.000
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.000
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.000
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.000
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.000
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.000
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.000
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.000
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.000
MDP0000156139 Malus domestica MDP0000156139 I 0.000
MDP0000451038 Malus domestica MDP0000451038 I 0.000
MDP0000451107 Malus domestica MDP0000451107 I 0.000
MDP0000701272 Malus domestica MDP0000701272 I 0.000
mgf004276m Mimulus guttatus mgf004276m I 0.000
mgf015314m Mimulus guttatus mgf015314m N 0.000
mgf018892m Mimulus guttatus mgf018892m N 0.000
mgf021983m Mimulus guttatus mgf021983m I 0.000
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.000
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.000
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.000
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.000
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.000
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.000
OB02G33250 Oryza brachyantha OB02G33250 I 0.000
OB04G27270 Oryza brachyantha OB04G27270 I 0.000
OBART02G25970 Oryza barthii OBART02G25970 I 0.000
OBART04G20290 Oryza barthii OBART04G20290 I 0.000
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.000
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.000
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.000
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.000
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.000
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.000
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.000
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.000
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.000
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.000
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.000
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.000
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.000
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.000
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.000
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.000
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.000
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.000
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.000
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.000
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.000
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.000
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.000
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.000
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.000
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.000
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.000
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.000
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.000
PK24122.1 Cannabis sativa PK24122.1 I 0.000
PK26613.1 Cannabis sativa PK26613.1 I 0.000
Pm001889 Prunus mume Pm001889 I 0.000
Pm022570 Prunus mume Pm022570 I 0.000
Pm022572 Prunus mume Pm022572 I 0.000
Pm024289 Prunus mume Pm024289 I 0.000
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.000
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.000
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.000
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.000
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.000
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.000
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.000
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.000
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.000
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.000
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.000
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.000
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.000
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.000
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.000
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.000
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.000
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.000
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.000
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.000
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.000
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.000
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.000
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.000
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.000
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.000
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.000
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.000
Si012121m.g Setaria italica Si012121m.g I 0.000
Si016578m.g Setaria italica Si016578m.g I 0.000
Si034382m.g Setaria italica Si034382m.g I 0.000
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.000
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.000
TCM_001348 Theobroma cacao TCM_001348 I 0.000
TCM_015563 Theobroma cacao TCM_015563 I 0.000
TCM_035565 Theobroma cacao TCM_035565 I 0.000
TCM_035571 Theobroma cacao TCM_035571 I 0.000
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.000
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.000
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.000
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.000
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.000
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.000
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.000
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.000
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.000
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.000