Carubv10019974m.g (Capsella rubella)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Carubv10019974m.g T250632_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.869 0.672
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.869 0.672
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10019974m MADF 102 172
Carubv10019974m MADF 456 528

Links

Other MADF family TFs
Other Capsella rubella TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29576.m000223 Ricinus communis 29576.m000223 I 0.920
30068.m002635 Ricinus communis 30068.m002635 I 0.858
30206.m000769 Ricinus communis 30206.m000769 I 0.932
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.842
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.867
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.860
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.869
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.882
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.879
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.864
Bo2g091240 Brassica oleracea Bo2g091240 I 0.954
Bo6g049430 Brassica oleracea Bo6g049430 I 0.873
Bo6g083690 Brassica oleracea Bo6g083690 I 0.936
Bo6g120870 Brassica oleracea Bo6g120870 I 0.936
Bo8g027460 Brassica oleracea Bo8g027460 I 0.928
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.936
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.931
Bra003702 Brassica rapa Bra003702 I 0.949
Bra003703 Brassica rapa Bra003703 I 0.937
Bra008285 Brassica rapa Bra008285 I 0.930
Bra015716 Brassica rapa Bra015716 I 0.936
Bra036731 Brassica rapa Bra036731 I 0.928
Bra040010 Brassica rapa Bra040010 I 0.873
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.813
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.856
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.882
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.971
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.936
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.884
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.874
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.936
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.932
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.943
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.940
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.859
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.859
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.859
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.823
Ca_04385 Cicer arietinum Ca_04385 I 0.923
Ca_04386 Cicer arietinum Ca_04386 I 0.917
Ca_25135 Cicer arietinum Ca_25135 I 0.934
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.925
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.934
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.869
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.923
Cla001992 Citrullus lanatus Cla001992 I 0.933
Cla005046 Citrullus lanatus Cla005046 I 0.868
Cla007910 Citrullus lanatus Cla007910 I 0.906
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.874
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.933
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.911
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.940
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.922
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.863
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.857
F775_24861 Aegilops tauschii F775_24861 N 0.834
F775_26337 Aegilops tauschii F775_26337 I 0.892
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.869
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.876
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.917
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.921
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.889
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.935
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.869
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.871
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.868
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.932
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.938
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.938
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.938
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.915
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.870
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.913
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.852
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.895
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.913
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.862
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.850
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.866
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.891
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.834
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.872
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.857
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.849
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.851
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.872
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.874
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.936
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.899
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.904
MDP0000156139 Malus domestica MDP0000156139 I 0.928
MDP0000451038 Malus domestica MDP0000451038 I 0.864
MDP0000451107 Malus domestica MDP0000451107 I 0.925
MDP0000701272 Malus domestica MDP0000701272 I 0.870
mgf004276m Mimulus guttatus mgf004276m I 0.867
mgf015314m Mimulus guttatus mgf015314m N 0.878
mgf018892m Mimulus guttatus mgf018892m N 0.904
mgf021983m Mimulus guttatus mgf021983m I 0.915
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.888
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.821
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.878
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.927
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.913
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.932
OB02G33250 Oryza brachyantha OB02G33250 I 0.886
OB04G27270 Oryza brachyantha OB04G27270 I 0.883
OBART02G25970 Oryza barthii OBART02G25970 I 0.891
OBART04G20290 Oryza barthii OBART04G20290 I 0.879
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.882
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.859
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.879
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.864
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.892
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.859
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.864
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.859
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.879
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.882
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.864
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.870
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.883
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.877
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.869
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.925
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.934
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.923
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.891
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.844
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.882
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.859
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.879
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.864
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.870
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.859
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.851
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.852
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.879
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.927
PK24122.1 Cannabis sativa PK24122.1 I 0.911
PK26613.1 Cannabis sativa PK26613.1 I 0.902
Pm022570 Prunus mume Pm022570 I 0.917
Pm022572 Prunus mume Pm022572 I 0.916
Pm024289 Prunus mume Pm024289 I 0.866
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.924
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.866
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.941
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.919
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.922
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.940
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.857
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.892
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.866
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.916
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.903
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.847
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.950
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.900
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.924
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.853
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.920
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.929
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.888
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.920
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.877
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.866
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.862
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.936
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.837
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.847
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.847
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.837
Si012121m.g Setaria italica Si012121m.g I 0.872
Si016578m.g Setaria italica Si016578m.g I 0.852
Si034382m.g Setaria italica Si034382m.g I 0.866
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.927
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.879
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.923
TCM_001348 Theobroma cacao TCM_001348 I 0.917
TCM_015563 Theobroma cacao TCM_015563 I 0.859
TCM_035565 Theobroma cacao TCM_035565 I 0.928
TCM_035571 Theobroma cacao TCM_035571 I 0.910
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.880
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.936
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.870
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.892
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.892
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.870
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.828
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.868
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.924
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.940