POPTR_0002s06920 (Populus trichocarpa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 POPTR_0002s06920 T249662_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.853 0.699
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.853 0.699
AT1G76880
M06970_2.00 		Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY		 Dap-seq
OMalley et al.(2016)
AT1G76880_col_a 		0.814 0.735
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s06920.1 MADF 78 147
POPTR_0002s06920.1 MADF 444 515

Links

Other MADF family TFs
Other Populus trichocarpa TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.853
AT1G76880 Arabidopsis thaliana AT1G76880 D 0.814
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.887
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.902
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.855
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.891
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.889
Bo2g091240 Brassica oleracea Bo2g091240 I 0.883
Bo6g049430 Brassica oleracea Bo6g049430 I 0.856
Bo6g083690 Brassica oleracea Bo6g083690 I 0.938
Bo6g120870 Brassica oleracea Bo6g120870 I 0.932
Bo8g027460 Brassica oleracea Bo8g027460 I 0.899
Bra003702 Brassica rapa Bra003702 I 0.908
Bra003703 Brassica rapa Bra003703 I 0.938
Bra008285 Brassica rapa Bra008285 I 0.931
Bra015716 Brassica rapa Bra015716 I 0.932
Bra036731 Brassica rapa Bra036731 I 0.899
Bra040010 Brassica rapa Bra040010 I 0.856
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.827
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.872
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.894
F775_26337 Aegilops tauschii F775_26337 I 0.903
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.853
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.948
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.927
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.941
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.951
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.941
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.894
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.833
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.863
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.899
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.865
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.812
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.821
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.894
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.822
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.835
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.855
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.884
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.898
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.899
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.856
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.853
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.922
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.949
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.934
OB02G33250 Oryza brachyantha OB02G33250 I 0.859
OB04G27270 Oryza brachyantha OB04G27270 I 0.895
OBART02G25970 Oryza barthii OBART02G25970 I 0.866
OBART04G20290 Oryza barthii OBART04G20290 I 0.891
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.855
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.862
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.891
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.889
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.903
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.862
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.889
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.873
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.891
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.855
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.889
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.840
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.895
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.900
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.866
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.875
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.855
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.873
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.891
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.889
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.944
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.914
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.898
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.929
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.964
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.934
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.890
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.917
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.898
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.925
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.901
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.899
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.863
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.894
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.938
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.879
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.845
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.845
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.879
Si012121m.g Setaria italica Si012121m.g I 0.903
Si016578m.g Setaria italica Si016578m.g I 0.848
Si034382m.g Setaria italica Si034382m.g I 0.889
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.944
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.950
TCM_001348 Theobroma cacao TCM_001348 I 0.922
TCM_015563 Theobroma cacao TCM_015563 I 0.910
TCM_035565 Theobroma cacao TCM_035565 I 0.958
TCM_035571 Theobroma cacao TCM_035571 I 0.942
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.884
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.891
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.903
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.884
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.909
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.905
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.935
Ca_04385 Cicer arietinum Ca_04385 I 0.917
Ca_04386 Cicer arietinum Ca_04386 I 0.957
Ca_25135 Cicer arietinum Ca_25135 I 0.936
Cla001992 Citrullus lanatus Cla001992 I 0.936
Cla005046 Citrullus lanatus Cla005046 I 0.881
Cla007910 Citrullus lanatus Cla007910 I 0.925
Pm001889 Prunus mume Pm001889 I 0.816
Pm022570 Prunus mume Pm022570 I 0.914
Pm022572 Prunus mume Pm022572 I 0.925
Pm024289 Prunus mume Pm024289 I 0.898
29576.m000223 Ricinus communis 29576.m000223 I 0.943
30068.m002635 Ricinus communis 30068.m002635 I 0.901
30206.m000769 Ricinus communis 30206.m000769 I 0.923
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.931
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.954
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.938
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.915
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.915
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.915
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.823
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.887
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.936
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.929
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.901
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.903
mgf004276m Mimulus guttatus mgf004276m I 0.905
mgf021983m Mimulus guttatus mgf021983m I 0.935
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.903
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.938
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.904
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.919
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.938
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.868
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.858
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.919
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.938
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.946
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.947
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.917
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.894
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.956
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.913
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.907
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.905
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.914
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.929
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.951
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.917
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.911
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.905
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.941
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.938
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.947
MDP0000156139 Malus domestica MDP0000156139 I 0.936
MDP0000451038 Malus domestica MDP0000451038 I 0.896
MDP0000451107 Malus domestica MDP0000451107 I 0.933
MDP0000701272 Malus domestica MDP0000701272 I 0.910
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.917
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.946
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.947
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.894
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.867
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.903
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.866
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.849
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.888
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.931
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.960
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.914
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.898
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.960
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.934
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.913
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.960
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.864
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.938
PK24122.1 Cannabis sativa PK24122.1 I 0.956
PK26613.1 Cannabis sativa PK26613.1 I 0.922
AMTR_s00002p00271480 Amborella trichopoda AMTR_s00002p00271480 N 0.839
F775_24861 Aegilops tauschii F775_24861 N 0.887
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.854
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.855
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.854
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.876
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.878
mgf015314m Mimulus guttatus mgf015314m N 0.892
mgf018892m Mimulus guttatus mgf018892m N 0.927
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.868
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.874
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.880