30099.m001671 (Ricinus communis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 30099.m001671 T257157_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
30099.m001671 MADS box 35 82

Links

Other MADS box family TFs
Other Ricinus communis TFs

214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL62 Arabidopsis thaliana AT5G60440 I 0.729
F775_04223 Aegilops tauschii F775_04223 I 0.708
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.708
TRAES3BF106100060CFD_g Triticum aestivum TRAES3BF106100060CFD_g I 0.708
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.833
MDP0000434703 Malus domestica MDP0000434703 I 0.708
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.737
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.708
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.708
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.812
AGL28 Arabidopsis thaliana AT1G01530 N 0.708
AGL23 Arabidopsis thaliana AT1G65360 N 0.708
AGL61 Arabidopsis thaliana AT2G24840 N 0.812
Bo1g112460 Brassica oleracea Bo1g112460 N 0.708
Bo4g157220 Brassica oleracea Bo4g157220 N 0.771
Bo4g165540 Brassica oleracea Bo4g165540 N 0.771
Bo5g113750 Brassica oleracea Bo5g113750 N 0.708
Bo8g099550 Brassica oleracea Bo8g099550 N 0.812
Bra007829 Brassica rapa Bra007829 N 0.812
Bra022434 Brassica rapa Bra022434 N 0.729
Bra026764 Brassica rapa Bra026764 N 0.812
Bra032057 Brassica rapa Bra032057 N 0.792
Bra035685 Brassica rapa Bra035685 N 0.745
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.750
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.854
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.708
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.708
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.708
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.708
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.729
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.896
GLYMA20G27361 Glycine max GLYMA20G27361 N 0.708
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.729
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.729
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.708
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.708
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.705
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.708
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.708
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.708
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.708
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.708
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.708
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.708
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.729
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.917
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.708
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.708
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.792
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.723
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.729
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.750
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.833
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.854
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.854
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.896
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.771
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.708
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.854
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.708
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.812
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.750
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.729
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.812
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.854
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.792
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.771
TCM_006323 Theobroma cacao TCM_006323 N 0.771
TCM_006324 Theobroma cacao TCM_006324 N 0.771
TCM_040735 Theobroma cacao TCM_040735 N 0.812
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.708
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.729
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.750
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.771
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.812
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.729
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.812
Ca_04659 Cicer arietinum Ca_04659 N 0.708
Ca_04660 Cicer arietinum Ca_04660 N 0.708
Ca_04661 Cicer arietinum Ca_04661 N 0.708
Ca_04662 Cicer arietinum Ca_04662 N 0.708
Ca_04665 Cicer arietinum Ca_04665 N 0.729
Ca_07607 Cicer arietinum Ca_07607 N 0.896
Ca_26354 Cicer arietinum Ca_26354 N 0.896
Cla006571 Citrullus lanatus Cla006571 N 0.750
Pm016629 Prunus mume Pm016629 N 0.812
Pm021017 Prunus mume Pm021017 N 0.708
Pm021018 Prunus mume Pm021018 N 0.750
Pm021070 Prunus mume Pm021070 N 0.854
Pm021071 Prunus mume Pm021071 N 0.729
29613.m000367 Ricinus communis 29613.m000367 N 0.938
29838.m001672 Ricinus communis 29838.m001672 N 0.708
30099.m001672 Ricinus communis 30099.m001672 N 0.729
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.729
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.708
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.750
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.938
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.750
mgf017842m Mimulus guttatus mgf017842m N 0.729
mgf018184m Mimulus guttatus mgf018184m N 0.729
mgf018529m Mimulus guttatus mgf018529m N 0.854
mgf020533m Mimulus guttatus mgf020533m N 0.750
mgf020939m Mimulus guttatus mgf020939m N 0.729
mgf021403m Mimulus guttatus mgf021403m N 0.771
mgf022403m Mimulus guttatus mgf022403m N 0.750
mgf023207m Mimulus guttatus mgf023207m N 0.750
mgf024307m Mimulus guttatus mgf024307m N 0.854
mgf024490m Mimulus guttatus mgf024490m N 0.750
mgf025566m Mimulus guttatus mgf025566m N 0.750
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.771
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.750
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.750
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.708
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.708
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.833
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.812
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.729
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.750
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.729
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.812
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.750
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.833
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.729
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.833
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.708
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.833
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.729
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.771
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.729
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.750
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.771
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.723
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.708
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.708
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.729
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.729
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.729
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.750
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.729
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.750
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.729
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.750
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.750
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.750
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.729
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.750
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.708
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.723
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.750
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.750
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.729
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.729
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.729
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.875
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.750
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.750
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.771
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.750
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.708
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.750
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.729
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.750
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.708
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.708
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.708
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.729
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.729
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.750
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.729
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.750
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.750
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.750
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.750
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.729
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.708
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.729
evm.TU.supercontig_695.8 Carica papaya evm.TU.supercontig_695.8 N 0.708
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.771
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.729
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.729
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.771
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.750
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.812
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.771
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.854
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.812
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.792
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.812
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.833
MDP0000168914 Malus domestica MDP0000168914 N 0.854
MDP0000221590 Malus domestica MDP0000221590 N 0.750
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.833
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.729
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.833
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.792
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.938
SapurV1A.1128s0080 Salix purpurea SapurV1A.1128s0080 N 0.792
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.708
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.833
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.833
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.750
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.750
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.729
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.708
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.896
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.708
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.708
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.750
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.708
chr5.LjT25B19.200.nd Lotus japonicus chr5.LjT25B19.200.nd N 0.708
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.750
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.750
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.875
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.896