29729.m002335 (Ricinus communis)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 29729.m002335 T246411_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.848 0.848
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.848 0.848
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29729.m002335 LOB 42 140

Links

Other LOB family TFs
Other Ricinus communis TFs

211 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.990
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.980
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.980
TCM_045438 Theobroma cacao TCM_045438 I 0.980
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.980
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.980
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.970
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.970
PK17217.1 Cannabis sativa PK17217.1 I 0.960
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.960
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.960
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.960
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.960
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.960
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.949
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.949
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.949
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.949
Cla007391 Citrullus lanatus Cla007391 I 0.949
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.949
LBD15 Arabidopsis thaliana AT2G40470 I 0.949
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.939
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.939
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.939
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.939
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.939
TCM_042262 Theobroma cacao TCM_042262 I 0.939
MDP0000278334 Malus domestica MDP0000278334 I 0.939
Bra016992 Brassica rapa Bra016992 I 0.939
Bo3g034980 Brassica oleracea Bo3g034980 I 0.939
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.939
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.939
Bra000188 Brassica rapa Bra000188 I 0.939
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.939
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.929
Bo4g012620 Brassica oleracea Bo4g012620 I 0.929
Ca_04126 Cicer arietinum Ca_04126 I 0.929
mgf011471m Mimulus guttatus mgf011471m I 0.929
Bo4g190210 Brassica oleracea Bo4g190210 I 0.929
Bra004572 Brassica rapa Bra004572 I 0.929
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.929
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.919
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.919
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.919
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.919
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.919
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.909
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.909
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.909
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.909
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.909
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.909
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.899
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.899
29957.m001411 Ricinus communis 29957.m001411 I 0.899
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.899
Ca_12420 Cicer arietinum Ca_12420 I 0.899
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.899
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.899
mgf020556m Mimulus guttatus mgf020556m I 0.899
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.899
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.889
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.889
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.889
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.889
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.889
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.879
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.879
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.879
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.879
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.879
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.879
OS05G0165450 Oryza sativa OS05G0165450 I 0.879
OBART05G04570 Oryza barthii OBART05G04570 I 0.879
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.879
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.879
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.879
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.879
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.879
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.869
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.869
Si012018m.g Setaria italica Si012018m.g I 0.869
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.869
Ca_15642 Cicer arietinum Ca_15642 I 0.869
Pm000277 Prunus mume Pm000277 I 0.869
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.859
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.859
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.859
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.859
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.859
F775_52636 Aegilops tauschii F775_52636 I 0.859
Bra021627 Brassica rapa Bra021627 I 0.859
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.859
Bo4g172950 Brassica oleracea Bo4g172950 I 0.859
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.859
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.859
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.848
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.848
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.848
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.848
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.848
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.848
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.848
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.848
F775_25790 Aegilops tauschii F775_25790 I 0.848
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.848
LBD13 Arabidopsis thaliana AT2G30340 D 0.848
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.848
Bo4g059520 Brassica oleracea Bo4g059520 I 0.848
Bra018320 Brassica rapa Bra018320 I 0.848
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.848
OBART01G35680 Oryza barthii OBART01G35680 I 0.848
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.848
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.848
Si004575m.g Setaria italica Si004575m.g I 0.848
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.848
OS01G0825000 Oryza sativa OS01G0825000 I 0.848
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.848
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.848
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.848
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.848
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.848
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.848
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.838
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.838
OB01G44400 Oryza brachyantha OB01G44400 I 0.838
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.838
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.838
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.838
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.838
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.828
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.828
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.828
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.818
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.797
OB05G14280 Oryza brachyantha OB05G14280 I 0.788
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.768
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.747
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.747
MDP0000268890 Malus domestica MDP0000268890 I 0.737
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.737
TCM_032557 Theobroma cacao TCM_032557 I 0.737
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.737
30169.m006340 Ricinus communis 30169.m006340 I 0.737
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.737
mgf026046m Mimulus guttatus mgf026046m I 0.737
Pm011040 Prunus mume Pm011040 I 0.737
MDP0000284409 Malus domestica MDP0000284409 I 0.737
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.727
MDP0000121203 Malus domestica MDP0000121203 I 0.727
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.727
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.727
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.727
PK11564.1 Cannabis sativa PK11564.1 I 0.727
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.727
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.727
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.727
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.727
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.727
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.727
Si026864m.g Setaria italica Si026864m.g I 0.727
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.727
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.727
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.727
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.727
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.727
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.727
Cla013678 Citrullus lanatus Cla013678 I 0.727
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.727
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.727
LBD4 Arabidopsis thaliana AT1G31320 D 0.727
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.727
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.727
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.717
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.717
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.717
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.717
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.717
PK24688.1 Cannabis sativa PK24688.1 I 0.717
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.717
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.717
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.717
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.717
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.717
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.717
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.717
Bra014907 Brassica rapa Bra014907 I 0.717
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.717
TCM_029315 Theobroma cacao TCM_029315 I 0.717
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.717
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.717
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.717
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.707
Bo7g041000 Brassica oleracea Bo7g041000 I 0.707
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.707
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.707
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.707
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.707
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.707
Si037583m.g Setaria italica Si037583m.g I 0.707
Ca_06548 Cicer arietinum Ca_06548 I 0.707
Ca_13575 Cicer arietinum Ca_13575 I 0.707
Ca_12450 Cicer arietinum Ca_12450 I 0.707
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.707
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.707
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.707
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.707
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.707
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.707
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.707
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.707