GLYMA02G40080 (Glycine max)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 GLYMA02G40080 T245178_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.838 0.838
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.838 0.838
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA02G40080.1 LOB 20 118
GLYMA02G40080.2 LOB 46 144

Links

Other LOB family TFs
Other Glycine max TFs

210 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK21617.1 Cannabis sativa PK21617.1 I 0.978
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.960
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.929
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.919
TCM_042262 Theobroma cacao TCM_042262 I 0.919
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.919
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.919
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.919
TCM_045438 Theobroma cacao TCM_045438 I 0.919
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.909
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.909
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.909
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.909
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.909
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.909
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.909
PK17217.1 Cannabis sativa PK17217.1 I 0.909
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.909
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.909
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.909
29729.m002335 Ricinus communis 29729.m002335 I 0.909
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.899
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.899
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.899
29957.m001411 Ricinus communis 29957.m001411 I 0.899
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.899
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.899
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.899
mgf011471m Mimulus guttatus mgf011471m I 0.899
Ca_15642 Cicer arietinum Ca_15642 I 0.899
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.899
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.899
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.889
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.889
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.889
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.889
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.889
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.889
Bo4g012620 Brassica oleracea Bo4g012620 I 0.889
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.889
Bo3g034980 Brassica oleracea Bo3g034980 I 0.889
Bra004572 Brassica rapa Bra004572 I 0.889
Bra000188 Brassica rapa Bra000188 I 0.889
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.889
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.889
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.889
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.889
LBD15 Arabidopsis thaliana AT2G40470 I 0.889
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.889
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.889
MDP0000278334 Malus domestica MDP0000278334 I 0.889
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.882
MDP0000167580 Malus domestica MDP0000167580 I 0.880
Cla007391 Citrullus lanatus Cla007391 I 0.879
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.879
Ca_04126 Cicer arietinum Ca_04126 I 0.879
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.879
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.879
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.879
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.879
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.879
Bo4g190210 Brassica oleracea Bo4g190210 I 0.879
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.879
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.879
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.879
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.879
OB05G14280 Oryza brachyantha OB05G14280 I 0.874
Pm000277 Prunus mume Pm000277 I 0.869
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.869
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.869
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.869
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.869
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.869
Ca_12420 Cicer arietinum Ca_12420 I 0.869
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.869
Bra016992 Brassica rapa Bra016992 I 0.859
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.849
Si004575m.g Setaria italica Si004575m.g I 0.848
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.848
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.848
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.848
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.848
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.848
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.848
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.848
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.848
Si012018m.g Setaria italica Si012018m.g I 0.848
Bo4g172950 Brassica oleracea Bo4g172950 I 0.848
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.848
Bra021627 Brassica rapa Bra021627 I 0.848
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.848
F775_25790 Aegilops tauschii F775_25790 I 0.848
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.838
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.838
OBART05G04570 Oryza barthii OBART05G04570 I 0.838
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.838
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.838
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.838
Bra018320 Brassica rapa Bra018320 I 0.838
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.838
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.838
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.838
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.838
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.838
LBD13 Arabidopsis thaliana AT2G30340 D 0.838
Bo4g059520 Brassica oleracea Bo4g059520 I 0.838
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.838
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.838
mgf020556m Mimulus guttatus mgf020556m I 0.838
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.838
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.838
OBART01G35680 Oryza barthii OBART01G35680 I 0.838
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.838
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.838
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.838
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.838
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.838
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.838
OS01G0825000 Oryza sativa OS01G0825000 I 0.838
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.838
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.838
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.838
OS05G0165450 Oryza sativa OS05G0165450 I 0.838
OB01G44400 Oryza brachyantha OB01G44400 I 0.828
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.828
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.828
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.828
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.828
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.828
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.828
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.818
F775_52636 Aegilops tauschii F775_52636 I 0.818
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.818
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.818
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.818
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.809
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.808
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.798
PK03716.1 Cannabis sativa PK03716.1 I 0.794
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.788
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.778
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.747
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.745
Cla006731 Citrullus lanatus Cla006731 I 0.745
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.737
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.737
Bo4g190140 Brassica oleracea Bo4g190140 I 0.737
PK17019.1 Cannabis sativa PK17019.1 I 0.735
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.729
Si026864m.g Setaria italica Si026864m.g I 0.727
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.727
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.727
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.727
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.727
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.717
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.717
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.717
Ca_12450 Cicer arietinum Ca_12450 I 0.717
mgf026046m Mimulus guttatus mgf026046m I 0.717
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.712
Sb08g000575 Sorghum bicolor Sb08g000575 I 0.708
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.707
30169.m006340 Ricinus communis 30169.m006340 I 0.707
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.707
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.707
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.707
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.707
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.707
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.707
Bra021612 Brassica rapa Bra021612 I 0.707
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.707
Bra018335 Brassica rapa Bra018335 I 0.707
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.707
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.707
Bo4g170770 Brassica oleracea Bo4g170770 I 0.707
Ca_13575 Cicer arietinum Ca_13575 I 0.707
Ca_24372 Cicer arietinum Ca_24372 I 0.707
LBD12 Arabidopsis thaliana AT2G30130 I 0.707
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
Pm011040 Prunus mume Pm011040 I 0.707
Bo4g059700 Brassica oleracea Bo4g059700 I 0.707
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.707
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.707
TCM_032557 Theobroma cacao TCM_032557 I 0.707
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.707
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.707
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.707
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.707
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.707
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.707
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.707
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.707
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.707
Si037583m.g Setaria italica Si037583m.g I 0.707
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.707
Bo3g024350 Brassica oleracea Bo3g024350 I 0.707
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.707
Bra022780 Brassica rapa Bra022780 I 0.707
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.707
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.707
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.707
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.707
MDP0000284409 Malus domestica MDP0000284409 I 0.707
TCM_016952 Theobroma cacao TCM_016952 I 0.707
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.707
MDP0000121203 Malus domestica MDP0000121203 I 0.707
MDP0000268890 Malus domestica MDP0000268890 I 0.707
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.707
PK29334.1 Cannabis sativa PK29334.1 I 0.703