Thhalv10017905m.g (Eutrema salsugineum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Thhalv10017905m.g T247352_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.848 0.848
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.848 0.848
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10017905m LOB 45 143

Links

Other LOB family TFs
Other Eutrema salsugineum TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.990
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.990
LBD15 Arabidopsis thaliana AT2G40470 I 0.990
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.990
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.990
Bra000188 Brassica rapa Bra000188 I 0.980
Bo3g034980 Brassica oleracea Bo3g034980 I 0.980
Bo4g190210 Brassica oleracea Bo4g190210 I 0.970
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.970
Bra016992 Brassica rapa Bra016992 I 0.960
Bo4g012620 Brassica oleracea Bo4g012620 I 0.960
Bra004572 Brassica rapa Bra004572 I 0.960
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.949
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.949
PK17217.1 Cannabis sativa PK17217.1 I 0.949
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.949
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.949
TCM_045438 Theobroma cacao TCM_045438 I 0.949
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.949
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.949
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.949
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.939
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.939
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.939
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.939
29729.m002335 Ricinus communis 29729.m002335 I 0.939
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.939
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.939
Cla007391 Citrullus lanatus Cla007391 I 0.929
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.929
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.929
Ca_04126 Cicer arietinum Ca_04126 I 0.929
Bo4g190140 Brassica oleracea Bo4g190140 I 0.921
29957.m001411 Ricinus communis 29957.m001411 I 0.919
MDP0000278334 Malus domestica MDP0000278334 I 0.919
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.919
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.919
PK21617.1 Cannabis sativa PK21617.1 I 0.913
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.909
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.909
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.909
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.909
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.909
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.909
OB05G14280 Oryza brachyantha OB05G14280 I 0.908
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.899
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.899
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.899
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.899
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.890
TCM_042262 Theobroma cacao TCM_042262 I 0.889
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.889
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.889
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.889
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.889
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.889
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.889
OS05G0165450 Oryza sativa OS05G0165450 I 0.889
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.889
mgf011471m Mimulus guttatus mgf011471m I 0.889
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.889
OBART05G04570 Oryza barthii OBART05G04570 I 0.889
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.889
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.889
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.889
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.889
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.889
mgf020556m Mimulus guttatus mgf020556m I 0.879
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.879
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.879
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.879
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.879
Si012018m.g Setaria italica Si012018m.g I 0.879
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.879
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.879
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.879
Ca_12420 Cicer arietinum Ca_12420 I 0.879
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.869
F775_52636 Aegilops tauschii F775_52636 I 0.869
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.869
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.869
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.869
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.869
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.869
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.869
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.869
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.869
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.869
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.869
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.869
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.869
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.863
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.859
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.859
Bo4g172950 Brassica oleracea Bo4g172950 I 0.859
Bra021627 Brassica rapa Bra021627 I 0.859
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.859
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.859
F775_25790 Aegilops tauschii F775_25790 I 0.859
OB01G44400 Oryza brachyantha OB01G44400 I 0.859
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.859
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.859
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.859
OBART01G35680 Oryza barthii OBART01G35680 I 0.859
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.859
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.859
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.859
Si004575m.g Setaria italica Si004575m.g I 0.859
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.859
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.859
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.859
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.859
OS01G0825000 Oryza sativa OS01G0825000 I 0.859
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.859
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.859
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.848
Bo4g059520 Brassica oleracea Bo4g059520 I 0.848
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.848
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.848
LBD13 Arabidopsis thaliana AT2G30340 D 0.848
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.848
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.848
Ca_15642 Cicer arietinum Ca_15642 I 0.848
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.848
Bra018320 Brassica rapa Bra018320 I 0.848
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.848
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.848
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.848
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.848
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.838
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.838
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.838
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.838
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.828
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.828
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.828
Pm000277 Prunus mume Pm000277 I 0.828
PK03716.1 Cannabis sativa PK03716.1 I 0.824
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.808
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.808
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.797
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.768
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.746
PK29334.1 Cannabis sativa PK29334.1 I 0.734
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.727
mgf026046m Mimulus guttatus mgf026046m I 0.727
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.717
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.717
PK11564.1 Cannabis sativa PK11564.1 I 0.717
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.717
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.717
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.717
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.717
Si037583m.g Setaria italica Si037583m.g I 0.717
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.707
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.707
Si026864m.g Setaria italica Si026864m.g I 0.707
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.707
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.707
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.707
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.707
Bo3g024350 Brassica oleracea Bo3g024350 I 0.707
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.707
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.707
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.707
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.707
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.707
Bra022780 Brassica rapa Bra022780 I 0.707
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.707
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
Pm011040 Prunus mume Pm011040 I 0.707
Cla013678 Citrullus lanatus Cla013678 I 0.707
MDP0000284409 Malus domestica MDP0000284409 I 0.707
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.707
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.707
MDP0000268890 Malus domestica MDP0000268890 I 0.707
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.707
PK17019.1 Cannabis sativa PK17019.1 I 0.706