Pavir.Ea03276 (Panicum virgatum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pavir.Ea03276 T247195_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.788 0.788
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.788 0.788
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea03276.1.p LOB 75 173
Pavir.Ea03276.2.p LOB 62 160

Links

Other LOB family TFs
Other Panicum virgatum TFs

165 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si004575m.g Setaria italica Si004575m.g I 0.980
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.970
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.960
OBART01G35680 Oryza barthii OBART01G35680 I 0.949
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.949
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.949
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.949
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.949
OS01G0825000 Oryza sativa OS01G0825000 I 0.949
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.949
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.949
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.949
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.949
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.949
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.945
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.939
OB01G44400 Oryza brachyantha OB01G44400 I 0.939
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.929
F775_25790 Aegilops tauschii F775_25790 I 0.929
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.919
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.909
PK21617.1 Cannabis sativa PK21617.1 I 0.870
Si012018m.g Setaria italica Si012018m.g I 0.869
OB05G14280 Oryza brachyantha OB05G14280 I 0.862
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.859
OBART05G04570 Oryza barthii OBART05G04570 I 0.859
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.859
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.859
OS05G0165450 Oryza sativa OS05G0165450 I 0.859
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.859
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.859
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.859
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.859
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.859
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.859
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.848
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.848
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.848
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.848
LBD15 Arabidopsis thaliana AT2G40470 I 0.848
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.848
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.848
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.848
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.848
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.848
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.848
F775_52636 Aegilops tauschii F775_52636 I 0.848
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.848
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.848
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.848
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.848
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.848
PK17217.1 Cannabis sativa PK17217.1 I 0.848
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.847
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.838
Bra000188 Brassica rapa Bra000188 I 0.838
TCM_045438 Theobroma cacao TCM_045438 I 0.838
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.838
Ca_04126 Cicer arietinum Ca_04126 I 0.838
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.838
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.838
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.838
Bo3g034980 Brassica oleracea Bo3g034980 I 0.838
Cla007391 Citrullus lanatus Cla007391 I 0.838
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.838
Bo4g012620 Brassica oleracea Bo4g012620 I 0.838
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.838
Bo4g190210 Brassica oleracea Bo4g190210 I 0.838
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.838
Bra004572 Brassica rapa Bra004572 I 0.838
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.836
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.828
TCM_042262 Theobroma cacao TCM_042262 I 0.828
29729.m002335 Ricinus communis 29729.m002335 I 0.828
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.828
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.828
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.828
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.828
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.828
Bra016992 Brassica rapa Bra016992 I 0.828
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.828
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.828
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.828
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.828
mgf011471m Mimulus guttatus mgf011471m I 0.828
mgf020556m Mimulus guttatus mgf020556m I 0.828
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.828
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.824
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.818
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.818
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.818
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.818
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.818
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.818
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.818
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.818
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.818
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.818
PK05388.1 Cannabis sativa PK05388.1 I 0.810
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.808
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.808
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.808
MDP0000278334 Malus domestica MDP0000278334 I 0.808
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.808
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.808
Ca_15642 Cicer arietinum Ca_15642 I 0.808
Pm000277 Prunus mume Pm000277 I 0.808
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.808
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.808
MDP0000167580 Malus domestica MDP0000167580 I 0.800
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.798
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.798
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.798
Bo4g172950 Brassica oleracea Bo4g172950 I 0.798
29957.m001411 Ricinus communis 29957.m001411 I 0.798
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.798
Ca_12420 Cicer arietinum Ca_12420 I 0.798
Bra021627 Brassica rapa Bra021627 I 0.798
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.798
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.798
Bo4g059520 Brassica oleracea Bo4g059520 I 0.788
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.788
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.788
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.788
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.788
LBD13 Arabidopsis thaliana AT2G30340 D 0.788
Bra018320 Brassica rapa Bra018320 I 0.788
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.788
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.788
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.788
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.787
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.778
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.778
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.778
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.778
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.778
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.768
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.768
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.768
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.768
PK03716.1 Cannabis sativa PK03716.1 I 0.765
Pm019028 Prunus mume Pm019028 I 0.764
Bo4g190140 Brassica oleracea Bo4g190140 I 0.763
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.758
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.758
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.746
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.734
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.729
Si037583m.g Setaria italica Si037583m.g I 0.717
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.717
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.717
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.707
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.707
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.707
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.707
mgf026046m Mimulus guttatus mgf026046m I 0.707
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.707
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.707
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.707
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.707
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.707
PK17019.1 Cannabis sativa PK17019.1 I 0.706