MTR_5g083960 (Medicago truncatula)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 MTR_5g083960 T245462_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.808 0.808
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.808 0.808
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES99716 LOB 39 137

Links

Other LOB family TFs
Other Medicago truncatula TFs

168 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_12420 Cicer arietinum Ca_12420 I 0.939
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.919
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.919
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.919
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.919
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.919
PK17217.1 Cannabis sativa PK17217.1 I 0.919
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.919
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.919
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.919
TCM_045438 Theobroma cacao TCM_045438 I 0.919
PK21617.1 Cannabis sativa PK21617.1 I 0.913
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.909
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.909
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.909
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.909
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.909
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.909
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.899
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.899
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.899
29729.m002335 Ricinus communis 29729.m002335 I 0.899
MDP0000278334 Malus domestica MDP0000278334 I 0.899
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.899
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.899
OB05G14280 Oryza brachyantha OB05G14280 I 0.897
LBD15 Arabidopsis thaliana AT2G40470 I 0.889
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.889
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.889
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.889
Bo4g190210 Brassica oleracea Bo4g190210 I 0.889
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.889
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.889
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.889
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.889
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.889
Bo3g034980 Brassica oleracea Bo3g034980 I 0.889
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.889
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.889
Ca_04126 Cicer arietinum Ca_04126 I 0.889
Bra000188 Brassica rapa Bra000188 I 0.889
MDP0000167580 Malus domestica MDP0000167580 I 0.880
Ca_15642 Cicer arietinum Ca_15642 I 0.879
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.879
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.879
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.879
Bo4g012620 Brassica oleracea Bo4g012620 I 0.879
Cla007391 Citrullus lanatus Cla007391 I 0.879
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.879
Bra004572 Brassica rapa Bra004572 I 0.879
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.877
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.869
mgf011471m Mimulus guttatus mgf011471m I 0.869
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.869
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.869
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.869
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.869
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.869
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.869
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.859
TCM_042262 Theobroma cacao TCM_042262 I 0.859
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.859
Bra016992 Brassica rapa Bra016992 I 0.859
Pm000277 Prunus mume Pm000277 I 0.859
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.859
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.848
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.848
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.848
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.848
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.848
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.848
OBART05G04570 Oryza barthii OBART05G04570 I 0.848
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.848
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.848
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.848
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.848
mgf020556m Mimulus guttatus mgf020556m I 0.848
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.848
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.848
OS05G0165450 Oryza sativa OS05G0165450 I 0.848
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.848
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.848
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.848
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.848
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.848
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.838
Si012018m.g Setaria italica Si012018m.g I 0.838
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.838
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.838
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.838
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.830
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.828
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.828
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.828
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.828
29957.m001411 Ricinus communis 29957.m001411 I 0.828
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.828
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.828
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.828
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.828
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.828
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.828
OS01G0825000 Oryza sativa OS01G0825000 I 0.828
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.828
OBART01G35680 Oryza barthii OBART01G35680 I 0.828
OB01G44400 Oryza brachyantha OB01G44400 I 0.828
F775_25790 Aegilops tauschii F775_25790 I 0.828
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.828
F775_52636 Aegilops tauschii F775_52636 I 0.828
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.828
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.828
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.828
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.828
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.828
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.828
Si004575m.g Setaria italica Si004575m.g I 0.828
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.828
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.828
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.828
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.828
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.824
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.818
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.818
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.818
Bo4g172950 Brassica oleracea Bo4g172950 I 0.818
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.818
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.818
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.818
Bra021627 Brassica rapa Bra021627 I 0.818
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.818
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.808
Bra018320 Brassica rapa Bra018320 I 0.808
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.808
LBD13 Arabidopsis thaliana AT2G30340 D 0.808
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.808
Bo4g059520 Brassica oleracea Bo4g059520 I 0.808
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.808
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.798
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.788
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.788
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.758
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.746
Bo4g190140 Brassica oleracea Bo4g190140 I 0.737
PK03716.1 Cannabis sativa PK03716.1 I 0.735
PK17019.1 Cannabis sativa PK17019.1 I 0.735
F775_33210 Aegilops tauschii F775_33210 I 0.726
PK29334.1 Cannabis sativa PK29334.1 I 0.719
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.717
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.717
TCM_032557 Theobroma cacao TCM_032557 I 0.717
30169.m006340 Ricinus communis 30169.m006340 I 0.717
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.717
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.713
Cla006731 Citrullus lanatus Cla006731 I 0.709
Pm011040 Prunus mume Pm011040 I 0.707
MDP0000268890 Malus domestica MDP0000268890 I 0.707
Si037583m.g Setaria italica Si037583m.g I 0.707
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.707
Si026864m.g Setaria italica Si026864m.g I 0.707
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.707
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.707
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.707
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.707
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.707
MDP0000284409 Malus domestica MDP0000284409 I 0.707
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.704
PK18922.1 Cannabis sativa PK18922.1 I 0.702