Gorai.003G151800 (Gossypium raimondii)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Gorai.003G151800 T246948_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.848 0.848
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.848 0.848
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.003G151800.1 LOB 40 138

Links

Other LOB family TFs
Other Gossypium raimondii TFs

150 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_042262 Theobroma cacao TCM_042262 I 0.970
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.939
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.929
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.919
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.909
TCM_045438 Theobroma cacao TCM_045438 I 0.909
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.909
PK17217.1 Cannabis sativa PK17217.1 I 0.909
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.909
29729.m002335 Ricinus communis 29729.m002335 I 0.909
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.909
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.909
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.909
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.909
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.909
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.909
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.909
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.899
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.899
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.899
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.899
mgf011471m Mimulus guttatus mgf011471m I 0.899
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.899
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.899
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.899
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.899
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.899
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.899
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.899
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.899
LBD15 Arabidopsis thaliana AT2G40470 I 0.899
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.889
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.889
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.889
Bo3g034980 Brassica oleracea Bo3g034980 I 0.889
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.889
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.889
Si012018m.g Setaria italica Si012018m.g I 0.889
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.889
Bra000188 Brassica rapa Bra000188 I 0.889
29957.m001411 Ricinus communis 29957.m001411 I 0.889
Cla007391 Citrullus lanatus Cla007391 I 0.889
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.889
Ca_15642 Cicer arietinum Ca_15642 I 0.889
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.889
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.889
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.889
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.889
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.879
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.879
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.879
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.879
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.879
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.879
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.879
Ca_04126 Cicer arietinum Ca_04126 I 0.879
Bra016992 Brassica rapa Bra016992 I 0.879
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.879
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.879
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.879
Bo4g190210 Brassica oleracea Bo4g190210 I 0.879
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.879
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.879
OBART05G04570 Oryza barthii OBART05G04570 I 0.879
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.879
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.879
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.879
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.879
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.879
OS05G0165450 Oryza sativa OS05G0165450 I 0.879
Bo4g012620 Brassica oleracea Bo4g012620 I 0.869
Bra004572 Brassica rapa Bra004572 I 0.869
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.869
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.869
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.869
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.869
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.869
MDP0000278334 Malus domestica MDP0000278334 I 0.869
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.859
mgf020556m Mimulus guttatus mgf020556m I 0.859
Ca_12420 Cicer arietinum Ca_12420 I 0.859
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.859
Bra021627 Brassica rapa Bra021627 I 0.859
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.859
Pm000277 Prunus mume Pm000277 I 0.859
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.859
Bo4g172950 Brassica oleracea Bo4g172950 I 0.859
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.859
F775_25790 Aegilops tauschii F775_25790 I 0.859
F775_52636 Aegilops tauschii F775_52636 I 0.859
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.859
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.859
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.859
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.859
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.859
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.859
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.859
LBD13 Arabidopsis thaliana AT2G30340 D 0.848
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.848
Bo4g059520 Brassica oleracea Bo4g059520 I 0.848
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.848
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.848
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.848
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.848
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.848
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.848
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.848
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.848
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.848
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.848
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.848
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.848
OBART01G35680 Oryza barthii OBART01G35680 I 0.848
OS01G0825000 Oryza sativa OS01G0825000 I 0.848
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.848
Bra018320 Brassica rapa Bra018320 I 0.848
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.848
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.848
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.848
Si004575m.g Setaria italica Si004575m.g I 0.848
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.838
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.838
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.838
OB01G44400 Oryza brachyantha OB01G44400 I 0.838
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.838
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.838
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.838
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.828
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.828
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.818
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.818
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.808
OB05G14280 Oryza brachyantha OB05G14280 I 0.798
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.798
PK03716.1 Cannabis sativa PK03716.1 I 0.794
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.788
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.788
Bo4g190140 Brassica oleracea Bo4g190140 I 0.737
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.729
mgf026046m Mimulus guttatus mgf026046m I 0.727
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.727
PK29334.1 Cannabis sativa PK29334.1 I 0.719
Si037583m.g Setaria italica Si037583m.g I 0.707
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.707
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.707
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.707
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.707
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.707
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707