gene01788-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene01788-v1.0-hybrid T258295_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL91
M10922_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G66656_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna01788.1-v1.0-hybrid MADS box 18 65

Links

Other MADS box family TFs
Other Fragaria vesca TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29613.m000367 Ricinus communis 29613.m000367 N 0.812
30099.m001671 Ricinus communis 30099.m001671 N 0.833
30099.m001672 Ricinus communis 30099.m001672 N 0.750
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.771
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.771
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.771
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.729
AGL28 Arabidopsis thaliana AT1G01530 N 0.750
AGL61 Arabidopsis thaliana AT2G24840 N 0.771
AGL91 Arabidopsis thaliana AT3G66656 D 0.708
AGL62 Arabidopsis thaliana AT5G60440 I 0.771
Bo1g112460 Brassica oleracea Bo1g112460 N 0.729
Bo2g024870 Brassica oleracea Bo2g024870 N 0.729
Bo4g070340 Brassica oleracea Bo4g070340 N 0.702
Bo4g157220 Brassica oleracea Bo4g157220 N 0.771
Bo4g165540 Brassica oleracea Bo4g165540 N 0.708
Bo5g113750 Brassica oleracea Bo5g113750 N 0.708
Bo8g099550 Brassica oleracea Bo8g099550 N 0.771
Bo9g142570 Brassica oleracea Bo9g142570 N 0.708
Bostr.22252s0371 Boechera stricta Bostr.22252s0371 I 0.729
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.771
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.729
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.708
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.792
Bra002480 Brassica rapa Bra002480 N 0.729
Bra007829 Brassica rapa Bra007829 N 0.771
Bra011938 Brassica rapa Bra011938 N 0.708
Bra020247 Brassica rapa Bra020247 N 0.729
Bra022434 Brassica rapa Bra022434 N 0.729
Bra026764 Brassica rapa Bra026764 N 0.812
Bra032057 Brassica rapa Bra032057 N 0.750
Bra038225 Brassica rapa Bra038225 N 0.708
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.771
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.708
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.708
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.771
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.708
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.708
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.771
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.771
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.729
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.812
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.833
Ca_04658 Cicer arietinum Ca_04658 N 0.729
Ca_04659 Cicer arietinum Ca_04659 N 0.750
Ca_04660 Cicer arietinum Ca_04660 N 0.750
Ca_04661 Cicer arietinum Ca_04661 N 0.750
Ca_04662 Cicer arietinum Ca_04662 N 0.729
Ca_04665 Cicer arietinum Ca_04665 N 0.750
Ca_07607 Cicer arietinum Ca_07607 N 0.812
Ca_18845 Cicer arietinum Ca_18845 N 0.708
Ca_24185 Cicer arietinum Ca_24185 I 0.750
Ca_26354 Cicer arietinum Ca_26354 N 0.812
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.854
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.729
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.708
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.750
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.708
chr5.LjT25B19.200.nd Lotus japonicus chr5.LjT25B19.200.nd N 0.708
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.708
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.771
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.729
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.750
Cla006571 Citrullus lanatus Cla006571 N 0.771
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.771
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.792
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.729
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.708
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.708
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.708
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.708
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.708
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.708
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.708
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.708
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.708
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.708
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.729
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.729
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.729
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.729
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N 0.729
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.729
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.729
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.708
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.708
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.708
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.771
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.729
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.708
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.729
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.729
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.708
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.729
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.708
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.708
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.708
evm.TU.supercontig_625.2 Carica papaya evm.TU.supercontig_625.2 N 0.708
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.729
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.729
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.729
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.708
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.708
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.708
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.708
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.708
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.750
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.750
AGL91 Arabidopsis lyrata fgenesh2_kg.3__679__AT3G66656.1 I 0.708
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.792
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.771
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.729
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.708
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.708
GLYMA17G01771 Glycine max GLYMA17G01771 N 0.708
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.750
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.729
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.750
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.812
GLYMA20G27361 Glycine max GLYMA20G27361 N 0.729
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.833
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.792
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.833
LjSGA_017605.1 Lotus japonicus LjSGA_017605.1 I 0.708
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.750
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.792
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.812
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.812
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.792
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.812
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.833
MDP0000168914 Malus domestica MDP0000168914 N 0.917
MDP0000221590 Malus domestica MDP0000221590 N 0.708
MDP0000233925 Malus domestica MDP0000233925 N 0.771
MDP0000278770 Malus domestica MDP0000278770 N 0.771
MDP0000434703 Malus domestica MDP0000434703 I 0.792
mgf018529m Mimulus guttatus mgf018529m N 0.812
mgf020533m Mimulus guttatus mgf020533m N 0.708
mgf022147m Mimulus guttatus mgf022147m N 0.708
mgf022403m Mimulus guttatus mgf022403m N 0.708
mgf023207m Mimulus guttatus mgf023207m N 0.708
mgf024307m Mimulus guttatus mgf024307m N 0.812
mgf024490m Mimulus guttatus mgf024490m N 0.708
mgf025566m Mimulus guttatus mgf025566m N 0.708
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.729
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.729
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.729
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.729
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.729
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.708
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.750
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.708
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.708
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.708
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.729
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.771
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.833
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.729
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.729
MTR_8g086290 Medicago truncatula MTR_8g086290 N 0.729
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.750
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.729
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.771
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.771
PGSC0003DMG400006290 Solanum tuberosum PGSC0003DMG400006290 N 0.708
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.708
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.812
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.812
Pm016629 Prunus mume Pm016629 N 0.875
Pm021018 Prunus mume Pm021018 N 0.729
Pm021070 Prunus mume Pm021070 N 0.917
Pm021071 Prunus mume Pm021071 N 0.812
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.771
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.771
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.771
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.771
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.771
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.917
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.875
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.729
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.812
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.792
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.792
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.729
SapurV1A.1128s0080 Salix purpurea SapurV1A.1128s0080 N 0.729
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.771
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.812
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.771
Solyc01g060300.1 Solanum lycopersicum Solyc01g060300.1 N 0.723
Solyc01g060310.1 Solanum lycopersicum Solyc01g060310.1 N 0.729
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.812
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.771
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.729
TCM_006323 Theobroma cacao TCM_006323 N 0.750
TCM_006324 Theobroma cacao TCM_006324 N 0.792
TCM_040735 Theobroma cacao TCM_040735 N 0.854
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.792
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.792
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.750
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.789
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.750
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.708
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.750
Thhalv10022154m.g Eutrema salsugineum Thhalv10022154m.g I 0.708
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.729
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.812
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.771
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.812
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.812
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.812
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.812
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.729