Solyc03g026280.2 (Solanum lycopersicum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Solyc03g026280.2 T005431_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.799 0.940
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.799 0.940
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.788 0.940
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.788 0.940
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.788 0.940
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.788 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.774 0.900
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.774 0.900
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.774 0.900
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.714 0.780
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.714 0.780
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.713 0.780
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.713 0.780
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.713 0.780
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.713 0.780
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.713 0.780
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.713 0.780
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.693 0.780
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.689 0.920
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.689 0.920
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.687 0.840
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.687 0.840
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.680 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc03g026280.2.1 AP2 53 104

Links

Other AP2 family TFs
Other Solanum lycopersicum TFs

208 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB1F Arabidopsis thaliana AT1G12610 D 0.713
DREB1C Arabidopsis thaliana AT4G25470 D 0.774
DREB1A Arabidopsis thaliana AT4G25480 D 0.788
DREB1B Arabidopsis thaliana AT4G25490 D 0.689
DREB1D Arabidopsis thaliana AT5G51990 D 0.799
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.713
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.680
DREB1G Oryza sativa OS02G0677300 D 0.714
DREB1E Oryza sativa OS04G0572400 D 0.693
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.687
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.687
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I 0.680
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.690
DREB1G Oryza indica BGIOSGA008804 I 0.714
DREB1E Oryza indica BGIOSGA016950 I 0.693
Bo01335s010 Brassica oleracea Bo01335s010 I 0.717
Bo7g110320 Brassica oleracea Bo7g110320 I 0.687
Bo8g050800 Brassica oleracea Bo8g050800 I 0.680
Bo8g108050 Brassica oleracea Bo8g108050 I 0.710
Bo9g104770 Brassica oleracea Bo9g104770 I 0.799
Bra010460 Brassica rapa Bra010460 I 0.680
Bra016763 Brassica rapa Bra016763 I 0.717
Bra019162 Brassica rapa Bra019162 I 0.687
Bra022770 Brassica rapa Bra022770 I 0.691
Bra026963 Brassica rapa Bra026963 I 0.710
Bra028290 Brassica rapa Bra028290 I 0.799
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.719
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.782
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.791
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.743
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.693
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.686
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.745
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.730
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.678
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.680
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.737
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.682
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.714
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.748
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.679
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.692
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.718
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.714
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.693
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.719
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.766
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.714
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.684
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.749
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.749
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.751
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.757
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.772
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.746
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.768
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.713
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.768
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.753
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.749
OBART02G27760 Oryza barthii OBART02G27760 I 0.714
OBART04G22220 Oryza barthii OBART04G22220 I 0.693
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.714
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.693
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.714
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.693
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.714
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.693
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.714
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.693
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.693
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.714
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.693
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.751
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.704
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.727
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.787
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.790
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.783
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.688
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.781
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.769
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.740
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.718
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.803
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.797
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.751
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.741
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.792
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.697
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.736
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.714
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.682
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.799
Si011005m.g Setaria italica Si011005m.g I 0.682
Si018262m.g Setaria italica Si018262m.g I 0.704
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.721
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.826
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.831
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.700
TCM_016175 Theobroma cacao TCM_016175 I 0.756
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.750
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.680
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.699
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.768
Ca_04504 Cicer arietinum Ca_04504 I 0.745
Ca_08732 Cicer arietinum Ca_08732 I 0.704
Ca_18948 Cicer arietinum Ca_18948 I 0.708
Cla002362 Citrullus lanatus Cla002362 I 0.800
Cla006315 Citrullus lanatus Cla006315 I 0.789
Cla011674 Citrullus lanatus Cla011674 I 0.766
Pm019386 Prunus mume Pm019386 I 0.712
Pm023769 Prunus mume Pm023769 I 0.736
Pm023772 Prunus mume Pm023772 I 0.733
Pm023775 Prunus mume Pm023775 I 0.751
30147.m014313 Ricinus communis 30147.m014313 I 0.777
30190.m011119 Ricinus communis 30190.m011119 I 0.717
30190.m011120 Ricinus communis 30190.m011120 I 0.750
60638.m00016 Ricinus communis 60638.m00016 I 0.730
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.702
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.796
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.803
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.759
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.719
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.779
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.791
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.763
mgf016974m Mimulus guttatus mgf016974m I 0.723
mgf017136m Mimulus guttatus mgf017136m I 0.758
mgf018631m Mimulus guttatus mgf018631m I 0.723
mgf018934m Mimulus guttatus mgf018934m I 0.723
mgf019061m Mimulus guttatus mgf019061m I 0.742
mgf022408m Mimulus guttatus mgf022408m I 0.723
mgf026339m Mimulus guttatus mgf026339m I 0.758
mgf026642m Mimulus guttatus mgf026642m I 0.811
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.746
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.691
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.729
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.727
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.693
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.683
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.703
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.799
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.680
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.773
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.800
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.773
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.799
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.705
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.796
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.773
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.773
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.744
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.705
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.799
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.737
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.739
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.743
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.715
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.704
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.710
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.715
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.680
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.715
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.704
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.709
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.715
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.704
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.789
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.776
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.698
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.771
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.805
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.774
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.751
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.803
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.759
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.754
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.754
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.754
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.678
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.679
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.713
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.754
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.754
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.716
MDP0000154764 Malus domestica MDP0000154764 I 0.754
MDP0000198054 Malus domestica MDP0000198054 I 0.753
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.718
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.737
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.748
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.714
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.714
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.680
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.760
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.781
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.718
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.769
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.760
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.781
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.716
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.799
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.680
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.800
PK23332.1 Cannabis sativa PK23332.1 I 0.805
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.683
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.702
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.709