cassava41192.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava41192.m1 T006924_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.776 0.760
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.776 0.760
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.776 0.760
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.776 0.760
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.776 0.760
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.776 0.760
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.764 0.820
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.764 0.820
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.760 0.800
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.760 0.800
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.760 0.800
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.760 0.800
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.748 0.720
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.725 0.780
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.725 0.780
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.725 0.780
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.722 0.800
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.722 0.800
DREB1E
M00963_2.00 		Arabidopsis thaliana
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana 		0.682 0.680
DREB1E
M06589_2.00 		Arabidopsis thaliana
NNNYYGYCGACATVD
HBATGTCGRCRRNNN		 Dap-seq
OMalley et al.(2016)
DDF2_col_a 		0.682 0.680
DREB1E
M09702_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_03 		0.682 0.680
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava41192.m1 AP2 47 98

Links

Other AP2 family TFs
Other Manihot esculenta TFs

201 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I 0.686
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.746
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.723
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.698
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.740
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.730
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.752
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.740
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.776
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.748
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.754
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.764
DREB1F Arabidopsis thaliana AT1G12610 D 0.776
DREB1E Arabidopsis thaliana AT1G63030 D 0.682
DREB1C Arabidopsis thaliana AT4G25470 D 0.725
DREB1A Arabidopsis thaliana AT4G25480 D 0.760
DREB1D Arabidopsis thaliana AT5G51990 D 0.764
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.766
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.764
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.748
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.760
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.786
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.760
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.727
Bo01335s010 Brassica oleracea Bo01335s010 I 0.782
Bo5g016750 Brassica oleracea Bo5g016750 I 0.733
Bo8g108050 Brassica oleracea Bo8g108050 I 0.773
Bo9g104770 Brassica oleracea Bo9g104770 I 0.764
Bra016763 Brassica rapa Bra016763 I 0.782
Bra019777 Brassica rapa Bra019777 I 0.678
Bra026963 Brassica rapa Bra026963 I 0.773
Bra027612 Brassica rapa Bra027612 I 0.704
Bra028290 Brassica rapa Bra028290 I 0.764
PK23332.1 Cannabis sativa PK23332.1 I 0.783
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.764
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.769
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.789
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.729
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.760
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.760
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.740
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.769
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.729
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.764
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.722
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.790
Ca_04504 Cicer arietinum Ca_04504 I 0.686
Ca_08732 Cicer arietinum Ca_08732 I 0.707
Ca_18948 Cicer arietinum Ca_18948 I 0.720
Cla002362 Citrullus lanatus Cla002362 I 0.751
Cla006315 Citrullus lanatus Cla006315 I 0.785
Cla011674 Citrullus lanatus Cla011674 I 0.791
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.729
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.765
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.722
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.729
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.766
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.729
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.787
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.766
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.736
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.686
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.678
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.685
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.686
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.686
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.678
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.680
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.686
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.678
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.792
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.778
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.779
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.764
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.748
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.786
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.783
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.806
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.715
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.701
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.785
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.736
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.762
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.708
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.814
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.799
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.679
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.712
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.729
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.744
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.795
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.784
Gorai.008G280600 Gossypium raimondii Gorai.008G280600 I 0.680
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.727
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.722
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.783
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.783
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.783
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.707
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.688
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.783
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.783
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.694
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.677
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.714
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.744
MDP0000154764 Malus domestica MDP0000154764 I 0.787
MDP0000198054 Malus domestica MDP0000198054 I 0.799
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.789
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.767
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.795
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.716
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.702
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.777
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.699
MTR_5g010910 Medicago truncatula MTR_5g010910 N 0.683
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.730
MTR_5g010940 Medicago truncatula MTR_5g010940 N 0.683
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.731
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.731
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.712
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.721
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.736
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.710
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.732
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.695
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.732
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.760
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.738
mgf016974m Mimulus guttatus mgf016974m I 0.680
mgf017136m Mimulus guttatus mgf017136m I 0.769
mgf018631m Mimulus guttatus mgf018631m I 0.680
mgf018934m Mimulus guttatus mgf018934m I 0.680
mgf019061m Mimulus guttatus mgf019061m I 0.756
mgf022408m Mimulus guttatus mgf022408m I 0.680
mgf026339m Mimulus guttatus mgf026339m I 0.746
mgf026642m Mimulus guttatus mgf026642m I 0.789
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.706
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.824
GSMUA_Achr2G20280_001 Musa acuminata GSMUA_Achr2G20280_001 I 0.701
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.691
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.794
OBART02G27760 Oryza barthii OBART02G27760 I 0.722
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.722
DREB1G Oryza indica BGIOSGA008804 I 0.722
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.722
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.722
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.722
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.722
DREB1G Oryza sativa OS02G0677300 D 0.722
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.722
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.722
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.832
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.806
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.784
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.806
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.795
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.789
Pm019386 Prunus mume Pm019386 I 0.691
Pm023769 Prunus mume Pm023769 I 0.775
Pm023772 Prunus mume Pm023772 I 0.775
Pm023775 Prunus mume Pm023775 I 0.790
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.790
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.787
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.770
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.712
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.731
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.775
30147.m014313 Ricinus communis 30147.m014313 I 0.769
30190.m011119 Ricinus communis 30190.m011119 I 0.811
30190.m011120 Ricinus communis 30190.m011120 I 0.767
60638.m00016 Ricinus communis 60638.m00016 I 0.816
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.810
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.774
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.806
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.806
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.810
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.773
Si018262m.g Setaria italica Si018262m.g I 0.712
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.738
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.761
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.759
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.756
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.739
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.706
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.740
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.727
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.766
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.697
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.747
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.744
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.740
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.748
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.722
TCM_016175 Theobroma cacao TCM_016175 I 0.767
TCM_041493 Theobroma cacao TCM_041493 N 0.694
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.837
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.745
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.784
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.760
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.722