CpipJ_CPIJ005582 (Culex pipiens)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 CpipJ_CPIJ005582 T326046_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bbx
M03975_2.00 		Drosophila melanogaster
NAACAATDNCATTGTTN
NAACAATGNHATTGTTN		 SELEX
Nitta et al.(2015)
bbx_1 		0.647 0.710
BBX
M05763_2.00 		Homo sapiens
TGAWCDNYGWTCA
TGAWCRNHGWTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX 		0.574 0.652
BBX
M05764_2.00 		Homo sapiens
TGAACDNYGTTCA
TGAACRNHGTTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX 		0.574 0.652
Bbx
M00196_2.00 		Mus musculus
TTCATTGA
TCAATGAA		 PBM
Badis et al.(2009)
Bbx_3753 		0.541 0.638
Cic
M00195_2.00 		Mus musculus
NNTGCTGABN
NVTCAGCANN		 PBM
Badis et al.(2009)
Cic_3454 		0.482 0.580
cic
M06452_2.00 		Drosophila melanogaster
YYCATTSA
TSAATGRR		 B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386 		0.446 0.551
gei-3
M00711_2.00 		Caenorhabditis elegans
NWNWMWDN
NHWKWNWN		 PBM
Narasimhan et al.(2015)
pTH10038 		0.445 0.565
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ005582-RA Sox 185 253

Links

Other Sox family TFs
Other Culex pipiens TFs

278 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29613.m000367 Ricinus communis 29613.m000367 N 0.000
29693.m002042 Ricinus communis 29693.m002042 N 0.000
30099.m001671 Ricinus communis 30099.m001671 N 0.000
30099.m001672 Ricinus communis 30099.m001672 N 0.000
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.000
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.000
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.000
Aquca_002_01450 Aquilegia coerulea Aquca_002_01450 N 0.000
Aquca_005_00477 Aquilegia coerulea Aquca_005_00477 N 0.000
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.000
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.000
Aquca_040_00096 Aquilegia coerulea Aquca_040_00096 N 0.000
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.000
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.000
AGL28 Arabidopsis thaliana AT1G01530 N 0.000
AGL23 Arabidopsis thaliana AT1G65360 N 0.000
AGL61 Arabidopsis thaliana AT2G24840 N 0.000
AGL91 Arabidopsis thaliana AT3G66656 D 0.000
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.000
AGL62 Arabidopsis thaliana AT5G60440 I 0.000
Bo1g112460 Brassica oleracea Bo1g112460 N 0.000
Bo2g024870 Brassica oleracea Bo2g024870 N 0.000
Bo2g024910 Brassica oleracea Bo2g024910 N 0.000
Bo4g157220 Brassica oleracea Bo4g157220 N 0.000
Bo4g165540 Brassica oleracea Bo4g165540 N 0.000
Bo5g113750 Brassica oleracea Bo5g113750 N 0.000
Bo8g099550 Brassica oleracea Bo8g099550 N 0.000
Bo9g142570 Brassica oleracea Bo9g142570 N 0.000
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.000
Bostr.2902s0113 Boechera stricta Bostr.2902s0113 I 0.000
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.000
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.000
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.000
Bra002480 Brassica rapa Bra002480 N 0.000
Bra007829 Brassica rapa Bra007829 N 0.000
Bra011938 Brassica rapa Bra011938 N 0.000
Bra020242 Brassica rapa Bra020242 N 0.000
Bra020247 Brassica rapa Bra020247 N 0.000
Bra022434 Brassica rapa Bra022434 N 0.000
Bra032057 Brassica rapa Bra032057 N 0.000
Bra038225 Brassica rapa Bra038225 N 0.000
Cagra.0133s0015 Capsella grandiflora Cagra.0133s0015 I 0.000
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.000
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.000
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.000
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.000
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.000
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.000
Carubv10014761m.g Capsella rubella Carubv10014761m.g I 0.000
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.000
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.000
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.000
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.000
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.000
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.000
cassava9834.m1 Manihot esculenta cassava9834.m1 N 0.000
Ca_04658 Cicer arietinum Ca_04658 N 0.000
Ca_04659 Cicer arietinum Ca_04659 N 0.000
Ca_04660 Cicer arietinum Ca_04660 N 0.000
Ca_04661 Cicer arietinum Ca_04661 N 0.000
Ca_04662 Cicer arietinum Ca_04662 N 0.000
Ca_04665 Cicer arietinum Ca_04665 N 0.000
Ca_07607 Cicer arietinum Ca_07607 N 0.000
Ca_26354 Cicer arietinum Ca_26354 N 0.000
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.000
chr1.LjB17A22.60.nc Lotus japonicus chr1.LjB17A22.60.nc N 0.000
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.000
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.000
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.000
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.000
chr5.LjT25B19.200.nd Lotus japonicus chr5.LjT25B19.200.nd N 0.000
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.000
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.000
Cla006571 Citrullus lanatus Cla006571 N 0.000
Cla010744 Citrullus lanatus Cla010744 N 0.000
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.000
Cucsa.342610 Cucumis sativus Cucsa.342610 N 0.000
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.000
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.000
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.000
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.000
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.000
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.000
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.000
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.000
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.000
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.000
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.000
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.000
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.000
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.000
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.000
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.000
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.000
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.000
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.000
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.000
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.000
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.000
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.000
evm.TU.supercontig_20.85 Carica papaya evm.TU.supercontig_20.85 N 0.000
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.000
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.000
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.000
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.000
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.000
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.000
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.000
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.000
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.000
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.000
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.000
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.000
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.000
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.000
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.000
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.000
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.000
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.000
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.000
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.000
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.000
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.000
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.000
F775_43210 Aegilops tauschii F775_43210 I 0.000
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.000
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.000
AGL91 Arabidopsis lyrata fgenesh2_kg.3__679__AT3G66656.1 I 0.000
AGL15 Arabidopsis lyrata fgenesh2_kg.6__1336__AT5G13790.1 I 0.000
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.000
gene07364-v1.0-hybrid Fragaria vesca gene07364-v1.0-hybrid N 0.000
gene30567-v1.0-hybrid Fragaria vesca gene30567-v1.0-hybrid I 0.000
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.000
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.000
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.000
GLYMA17G01771 Glycine max GLYMA17G01771 N 0.000
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.000
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.000
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.000
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.000
GLYMA20G27361 Glycine max GLYMA20G27361 N 0.000
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.000
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.000
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.000
Gorai.010G165500 Gossypium raimondii Gorai.010G165500 I 0.000
LjSGA_020620.1 Lotus japonicus LjSGA_020620.1 N 0.000
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.000
LjSGA_067087.1 Lotus japonicus LjSGA_067087.1 N 0.000
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.000
LjSGA_082681.2 Lotus japonicus LjSGA_082681.2 N 0.000
LjSGA_120826.2 Lotus japonicus LjSGA_120826.2 N 0.000
LjT01D09.100.nd Lotus japonicus LjT01D09.100.nd N 0.000
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.000
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.000
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.000
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.000
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.000
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.000
MDP0000168914 Malus domestica MDP0000168914 N 0.000
MDP0000233925 Malus domestica MDP0000233925 N 0.000
MDP0000278770 Malus domestica MDP0000278770 N 0.000
mgf018529m Mimulus guttatus mgf018529m N 0.000
mgf022625m Mimulus guttatus mgf022625m N 0.000
mgf024307m Mimulus guttatus mgf024307m N 0.000
mgf024454m Mimulus guttatus mgf024454m N 0.000
MTR_0121s0080 Medicago truncatula MTR_0121s0080 N 0.000
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.000
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.000
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.000
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.000
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.000
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.000
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.000
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.000
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.000
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.000
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.000
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.000
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.000
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.000
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.000
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.000
MTR_4g036915 Medicago truncatula MTR_4g036915 I 0.000
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.000
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.000
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.000
MTR_7g028448 Medicago truncatula MTR_7g028448 I 0.000
MTR_7g062350 Medicago truncatula MTR_7g062350 N 0.000
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.000
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.000
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.000
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.000
PGSC0003DMG400040625 Solanum tuberosum PGSC0003DMG400040625 N 0.000
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.000
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.000
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.000
PGSC0003DMG400046706 Solanum tuberosum PGSC0003DMG400046706 N 0.000
Pm002317 Prunus mume Pm002317 N 0.000
Pm016629 Prunus mume Pm016629 N 0.000
Pm021018 Prunus mume Pm021018 N 0.000
Pm021070 Prunus mume Pm021070 N 0.000
Pm021071 Prunus mume Pm021071 N 0.000
POPTR_0004s13590 Populus trichocarpa POPTR_0004s13590 N 0.000
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.000
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.000
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.000
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.000
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.000
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.000
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.000
PRUPE_ppb022733mg Prunus persica PRUPE_ppb022733mg N 0.000
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.000
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.000
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.000
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.000
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.000
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.000
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.000
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.000
TCM_006323 Theobroma cacao TCM_006323 N 0.000
TCM_006324 Theobroma cacao TCM_006324 N 0.000
TCM_029518 Theobroma cacao TCM_029518 I 0.000
TCM_040735 Theobroma cacao TCM_040735 N 0.000
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.000
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.000
Thhalv10003315m.g Eutrema salsugineum Thhalv10003315m.g N 0.000
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.000
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.000
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.000
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.000
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.000
Thhalv10022154m.g Eutrema salsugineum Thhalv10022154m.g I 0.000
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.000
Traes_6DL_609A01BD5 Triticum aestivum Traes_6DL_609A01BD5 I 0.000
VIT_00s0386g00010 Vitis vinifera VIT_00s0386g00010 N 0.000
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.000
VIT_02s0025g04650 Vitis vinifera VIT_02s0025g04650 I 0.000
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.000
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.000
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.000
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.000
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.000