Cagra.2248s0026 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.2248s0026 T007761_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.801 0.940
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.801 0.940
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.797 0.920
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.797 0.920
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.797 0.920
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.797 0.920
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.775 0.900
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.775 0.900
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.775 0.900
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.739 0.820
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.739 0.820
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.726 0.780
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.726 0.780
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.726 0.780
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.726 0.780
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.726 0.780
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.726 0.780
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.709 0.920
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.709 0.920
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.697 0.740
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.693 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2248s0026.1.p AP2 51 102

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

221 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30147.m014313 Ricinus communis 30147.m014313 I 0.806
30190.m011119 Ricinus communis 30190.m011119 I 0.747
30190.m011120 Ricinus communis 30190.m011120 I 0.758
60638.m00016 Ricinus communis 60638.m00016 I 0.753
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I 0.695
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.719
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.736
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.692
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.730
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.728
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.701
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.691
Bo01335s010 Brassica oleracea Bo01335s010 I 0.732
Bo5g016750 Brassica oleracea Bo5g016750 I 0.690
Bo7g110320 Brassica oleracea Bo7g110320 I 0.709
Bo8g050800 Brassica oleracea Bo8g050800 I 0.681
Bo8g108050 Brassica oleracea Bo8g108050 I 0.730
Bo9g104770 Brassica oleracea Bo9g104770 I 0.801
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.715
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.801
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.697
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.810
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.836
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.810
Bra010460 Brassica rapa Bra010460 I 0.681
Bra016763 Brassica rapa Bra016763 I 0.732
Bra019162 Brassica rapa Bra019162 I 0.709
Bra019777 Brassica rapa Bra019777 I 0.689
Bra022770 Brassica rapa Bra022770 I 0.705
Bra026963 Brassica rapa Bra026963 I 0.730
Bra028290 Brassica rapa Bra028290 I 0.801
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.744
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.801
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.718
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.679
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.810
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.810
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.780
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.718
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.679
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.801
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.731
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.804
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.832
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.789
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.699
Ca_04504 Cicer arietinum Ca_04504 I 0.730
Ca_08732 Cicer arietinum Ca_08732 I 0.690
Ca_18948 Cicer arietinum Ca_18948 I 0.716
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.804
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.801
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.687
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.723
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.779
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.748
Cla002362 Citrullus lanatus Cla002362 I 0.801
Cla006315 Citrullus lanatus Cla006315 I 0.832
Cla011674 Citrullus lanatus Cla011674 I 0.782
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.780
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.834
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.757
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.726
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.697
DREB1A Arabidopsis thaliana AT4G25480 D 0.797
DREB1C Arabidopsis thaliana AT4G25470 D 0.775
DREB1D Arabidopsis thaliana AT5G51990 D 0.801
DREB1E Oryza indica BGIOSGA016950 I 0.693
DREB1E Oryza sativa OS04G0572400 D 0.693
DREB1F Arabidopsis thaliana AT1G12610 D 0.726
DREB1G Oryza indica BGIOSGA008804 I 0.739
DREB1G Oryza sativa OS02G0677300 D 0.739
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.773
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.723
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.712
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.718
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.723
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.688
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.723
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.712
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.682
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.717
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.723
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.712
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.804
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.791
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.728
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.780
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.833
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.790
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.705
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.685
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.810
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.773
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.701
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.694
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.753
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.738
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.697
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.696
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.779
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.794
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.832
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.775
Gorai.008G280600 Gossypium raimondii Gorai.008G280600 I 0.704
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.678
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.739
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.684
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.781
GSMUA_Achr2G20280_001 Musa acuminata GSMUA_Achr2G20280_001 I 0.679
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.690
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.711
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.751
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.738
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.739
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.693
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.726
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.726
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.726
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.701
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.680
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.714
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.726
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.726
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.717
MDP0000154764 Malus domestica MDP0000154764 I 0.784
MDP0000198054 Malus domestica MDP0000198054 I 0.783
mgf016974m Mimulus guttatus mgf016974m I 0.717
mgf017136m Mimulus guttatus mgf017136m I 0.783
mgf017477m Mimulus guttatus mgf017477m N 0.687
mgf018631m Mimulus guttatus mgf018631m I 0.717
mgf018934m Mimulus guttatus mgf018934m I 0.717
mgf019061m Mimulus guttatus mgf019061m I 0.768
mgf022408m Mimulus guttatus mgf022408m I 0.717
mgf026339m Mimulus guttatus mgf026339m I 0.742
mgf026642m Mimulus guttatus mgf026642m I 0.826
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.744
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.752
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.715
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.682
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.713
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.734
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.744
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.723
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.732
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.747
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.731
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.743
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.700
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.743
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.768
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.736
OBART02G27760 Oryza barthii OBART02G27760 I 0.739
OBART04G22220 Oryza barthii OBART04G22220 I 0.693
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.739
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.693
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.739
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.693
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.739
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.693
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.739
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.693
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.705
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.779
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.750
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.693
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.739
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.693
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.739
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.739
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.733
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.723
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.752
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.683
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.784
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.781
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.790
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.698
PK23332.1 Cannabis sativa PK23332.1 I 0.833
Pm019386 Prunus mume Pm019386 I 0.741
Pm023769 Prunus mume Pm023769 I 0.766
Pm023772 Prunus mume Pm023772 I 0.758
Pm023775 Prunus mume Pm023775 I 0.781
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.767
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.749
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.726
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.748
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.832
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.826
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.781
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.770
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.820
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.696
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.722
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.766
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.709
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.709
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.746
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.811
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.748
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.749
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.746
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.810
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.739
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.678
Si011005m.g Setaria italica Si011005m.g I 0.678
Si018262m.g Setaria italica Si018262m.g I 0.729
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.687
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.811
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.796
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.806
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.726
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.692
TCM_016175 Theobroma cacao TCM_016175 I 0.765
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.729
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.801
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.697
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.836
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.779
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.688
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.728
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.797