Al_scaffold_0002_1221 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Al_scaffold_0002_1221 T252780_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0002_1221 MADS box 15 62

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

234 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29613.m000367 Ricinus communis 29613.m000367 N 0.771
29693.m002039 Ricinus communis 29693.m002039 I 0.708
29838.m001672 Ricinus communis 29838.m001672 N 0.708
30099.m001671 Ricinus communis 30099.m001671 N 0.708
30099.m001672 Ricinus communis 30099.m001672 N 0.854
AGL23 Arabidopsis thaliana AT1G65360 N 0.750
AGL28 Arabidopsis thaliana AT1G01530 N 0.854
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.750
AGL61 Arabidopsis thaliana AT2G24840 N 0.750
AGL62 Arabidopsis thaliana AT5G60440 I 0.833
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.854
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.896
Aquca_005_00477 Aquilegia coerulea Aquca_005_00477 N 0.708
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.708
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.708
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.792
Bo1g112460 Brassica oleracea Bo1g112460 N 0.812
Bo2g024870 Brassica oleracea Bo2g024870 N 0.729
Bo2g024910 Brassica oleracea Bo2g024910 N 0.750
Bo4g111230 Brassica oleracea Bo4g111230 I 0.729
Bo4g165540 Brassica oleracea Bo4g165540 N 0.708
Bo5g113750 Brassica oleracea Bo5g113750 N 0.792
Bo8g099550 Brassica oleracea Bo8g099550 N 0.708
Bo9g142570 Brassica oleracea Bo9g142570 N 0.833
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.875
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.833
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.833
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.771
Bra002480 Brassica rapa Bra002480 N 0.854
Bra007829 Brassica rapa Bra007829 N 0.708
Bra020247 Brassica rapa Bra020247 N 0.750
Bra022434 Brassica rapa Bra022434 N 0.771
Bra038225 Brassica rapa Bra038225 N 0.792
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.750
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.792
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.792
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.875
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.792
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.792
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.750
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.875
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.771
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.729
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.812
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.708
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.750
Ca_04659 Cicer arietinum Ca_04659 N 0.792
Ca_04660 Cicer arietinum Ca_04660 N 0.792
Ca_04661 Cicer arietinum Ca_04661 N 0.750
Ca_04662 Cicer arietinum Ca_04662 N 0.729
Ca_04665 Cicer arietinum Ca_04665 N 0.792
Ca_07607 Cicer arietinum Ca_07607 N 0.750
Ca_26354 Cicer arietinum Ca_26354 N 0.750
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.771
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.792
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.792
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.771
Ciclev10018138m.g Citrus clementina Ciclev10018138m.g N 0.708
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.812
Cla006571 Citrullus lanatus Cla006571 N 0.854
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.854
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.729
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.729
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.771
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.812
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.729
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.812
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.792
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.729
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.702
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.812
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.792
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.812
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.792
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.812
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.812
evm.TU.contig_33091.2 Carica papaya evm.TU.contig_33091.2 N 0.714
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.771
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.708
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.833
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.833
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.729
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.833
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.729
evm.TU.contig_41453 Carica papaya evm.TU.contig_41453 N 0.717
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.771
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.702
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.812
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.771
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.750
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.771
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.812
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.729
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.729
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.812
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.729
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.833
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.792
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.771
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.812
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.812
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.729
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.792
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.812
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.812
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.729
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.771
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.771
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.833
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.833
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.812
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.729
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.833
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.812
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.792
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.812
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.750
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.812
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.812
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.750
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.812
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.771
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.854
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.750
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.750
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.729
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.750
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.792
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.771
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.771
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.750
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.854
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.833
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.771
Gorai.010G165500 Gossypium raimondii Gorai.010G165500 I 0.708
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.750
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.729
LjSGA_067087.1 Lotus japonicus LjSGA_067087.1 N 0.729
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.750
LjSGA_082681.2 Lotus japonicus LjSGA_082681.2 N 0.708
LjSGA_120826.2 Lotus japonicus LjSGA_120826.2 N 0.708
LjT01D09.100.nd Lotus japonicus LjT01D09.100.nd N 0.729
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.792
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.771
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.792
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.771
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.729
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.708
MDP0000168914 Malus domestica MDP0000168914 N 0.771
MDP0000221590 Malus domestica MDP0000221590 N 0.771
MDP0000233925 Malus domestica MDP0000233925 N 0.792
MDP0000278770 Malus domestica MDP0000278770 N 0.792
MDP0000434703 Malus domestica MDP0000434703 I 0.812
mgf018529m Mimulus guttatus mgf018529m N 0.792
mgf022147m Mimulus guttatus mgf022147m N 0.750
mgf022625m Mimulus guttatus mgf022625m N 0.708
mgf022790m Mimulus guttatus mgf022790m N 0.708
mgf024307m Mimulus guttatus mgf024307m N 0.792
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.771
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.792
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.792
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.729
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.771
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.771
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.771
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.729
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.771
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.771
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.771
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.729
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.771
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.771
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.812
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.750
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.771
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.708
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.750
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.771
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.812
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.771
PGSC0003DMG400006290 Solanum tuberosum PGSC0003DMG400006290 N 0.708
PGSC0003DMG400034832 Solanum tuberosum PGSC0003DMG400034832 N 0.714
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.729
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.745
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.771
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.771
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.771
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.771
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.708
PK28167.1 Cannabis sativa PK28167.1 I 0.708
Pm016629 Prunus mume Pm016629 N 0.729
Pm021018 Prunus mume Pm021018 N 0.812
Pm021070 Prunus mume Pm021070 N 0.792
Pm021071 Prunus mume Pm021071 N 0.833
Pm030655 Prunus mume Pm030655 I 0.708
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.812
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.708
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.812
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.812
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.792
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.729
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.708
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.812
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.833
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.833
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.708
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.792
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.812
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.854
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.750
Solyc01g060300.1 Solanum lycopersicum Solyc01g060300.1 N 0.723
Solyc01g060310.1 Solanum lycopersicum Solyc01g060310.1 N 0.729
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.771
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.771
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.833
TCM_006323 Theobroma cacao TCM_006323 N 0.854
TCM_006324 Theobroma cacao TCM_006324 N 0.729
TCM_040735 Theobroma cacao TCM_040735 N 0.750
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.750
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.771
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.771
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.854
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.816
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.833
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.833
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.771
VIT_00s0386g00010 Vitis vinifera VIT_00s0386g00010 N 0.708
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.833
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.833
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.833
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.812
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.771
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.812
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.771