CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_1g105920
(
Medicago truncatula
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
MTR_1g105920
T254719_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
KEH43980
MADS box
17
64
KMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSF
Links
Other
MADS box
family TFs
Other
Medicago truncatula
TFs
262 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
27866.m000233
Ricinus communis
27866.m000233
N
0.708
29613.m000367
Ricinus communis
29613.m000367
N
0.729
30099.m001671
Ricinus communis
30099.m001671
N
0.708
30099.m001672
Ricinus communis
30099.m001672
N
0.854
Al_scaffold_0001_74
Arabidopsis lyrata
Al_scaffold_0001_74
N
0.812
Al_scaffold_0002_1221
Arabidopsis lyrata
Al_scaffold_0002_1221
N
0.771
AGL61
Arabidopsis lyrata
Al_scaffold_0004_541
N
0.708
Aquca_054_00126
Aquilegia coerulea
Aquca_054_00126
N
0.729
AGL28
Arabidopsis thaliana
AT1G01530
N
0.771
AGL23
Arabidopsis thaliana
AT1G65360
N
0.750
AGL61
Arabidopsis thaliana
AT2G24840
N
0.708
AT4G36590
Arabidopsis thaliana
AT4G36590
N
0.833
AGL62
Arabidopsis thaliana
AT5G60440
I
0.917
Bo1g112460
Brassica oleracea
Bo1g112460
N
0.833
Bo2g024910
Brassica oleracea
Bo2g024910
N
0.708
Bo4g070340
Brassica oleracea
Bo4g070340
N
0.723
Bo4g165540
Brassica oleracea
Bo4g165540
N
0.729
Bo5g113750
Brassica oleracea
Bo5g113750
N
0.812
Bo9g142570
Brassica oleracea
Bo9g142570
N
0.875
Bostr.26833s0197
Boechera stricta
Bostr.26833s0197
N
0.875
Bostr.5325s0071
Boechera stricta
Bostr.5325s0071
N
0.833
Bostr.7867s1515
Boechera stricta
Bostr.7867s1515
N
0.833
Bostr.8705s0016
Boechera stricta
Bostr.8705s0016
N
0.729
Bra002480
Brassica rapa
Bra002480
N
0.875
Bra011938
Brassica rapa
Bra011938
N
0.729
Bra020247
Brassica rapa
Bra020247
N
0.729
Bra022434
Brassica rapa
Bra022434
N
0.792
Bra026764
Brassica rapa
Bra026764
N
0.708
Bra035685
Brassica rapa
Bra035685
N
0.702
Bra038225
Brassica rapa
Bra038225
N
0.812
BRADI1G27900
Brachypodium distachyon
BRADI1G27900
N
0.708
Cagra.1004s0007
Capsella grandiflora
Cagra.1004s0007
N
0.708
Cagra.1695s0023
Capsella grandiflora
Cagra.1695s0023
N
0.771
Cagra.1968s0094
Capsella grandiflora
Cagra.1968s0094
N
0.792
Cagra.2519s0016
Capsella grandiflora
Cagra.2519s0016
N
0.875
Carubv10007644m.g
Capsella rubella
Carubv10007644m.g
N
0.771
Carubv10010156m.g
Capsella rubella
Carubv10010156m.g
N
0.792
Carubv10024914m.g
Capsella rubella
Carubv10024914m.g
N
0.708
Carubv10028580m.g
Capsella rubella
Carubv10028580m.g
N
0.875
cassava21387.m1
Manihot esculenta
cassava21387.m1
N
0.729
cassava21573.m1
Manihot esculenta
cassava21573.m1
N
0.708
cassava33542.m1
Manihot esculenta
cassava33542.m1
N
0.875
cassava8711.m1
Manihot esculenta
cassava8711.m1
N
0.750
Ca_04659
Cicer arietinum
Ca_04659
N
0.938
Ca_04660
Cicer arietinum
Ca_04660
N
0.938
Ca_04661
Cicer arietinum
Ca_04661
N
0.875
Ca_04662
Cicer arietinum
Ca_04662
N
0.938
Ca_04665
Cicer arietinum
Ca_04665
N
0.979
Ca_07607
Cicer arietinum
Ca_07607
N
0.750
Ca_26354
Cicer arietinum
Ca_26354
N
0.750
chr1.CM0088.830.nc
Lotus japonicus
chr1.CM0088.830.nc
N
0.729
chr2.CM0904.120.nd
Lotus japonicus
chr2.CM0904.120.nd
N
0.875
chr3.CM0279.290.nc
Lotus japonicus
chr3.CM0279.290.nc
N
0.833
chr5.LjT25B19.190.nd
Lotus japonicus
chr5.LjT25B19.190.nd
N
0.708
chr5.LjT39E05.40.nd
Lotus japonicus
chr5.LjT39E05.40.nd
N
0.792
Ciclev10013802m.g
Citrus clementina
Ciclev10013802m.g
N
0.708
Ciclev10030142m.g
Citrus clementina
Ciclev10030142m.g
N
0.875
Cla006571
Citrullus lanatus
Cla006571
N
0.875
Cucsa.298560
Cucumis sativus
Cucsa.298560
N
0.875
Eucgr.G01185
Eucalyptus grandis
Eucgr.G01185
N
0.708
Eucgr.H04834
Eucalyptus grandis
Eucgr.H04834
N
0.729
Eucgr.I02506
Eucalyptus grandis
Eucgr.I02506
N
0.917
evm.TU.contig_24748.4
Carica papaya
evm.TU.contig_24748.4
N
0.812
evm.TU.contig_24748.5
Carica papaya
evm.TU.contig_24748.5
N
0.771
evm.TU.contig_26687.3
Carica papaya
evm.TU.contig_26687.3
N
0.812
evm.TU.contig_27313
Carica papaya
evm.TU.contig_27313
N
0.771
evm.TU.contig_27553.3
Carica papaya
evm.TU.contig_27553.3
N
0.771
evm.TU.contig_28241.1
Carica papaya
evm.TU.contig_28241.1
N
0.812
evm.TU.contig_30005.4
Carica papaya
evm.TU.contig_30005.4
N
0.812
evm.TU.contig_30114.1
Carica papaya
evm.TU.contig_30114.1
N
0.812
evm.TU.contig_30689
Carica papaya
evm.TU.contig_30689
N
0.792
evm.TU.contig_30908.1
Carica papaya
evm.TU.contig_30908.1
N
0.812
evm.TU.contig_33038
Carica papaya
evm.TU.contig_33038
N
0.812
evm.TU.contig_33091.3
Carica papaya
evm.TU.contig_33091.3
N
0.729
evm.TU.contig_35157.1
Carica papaya
evm.TU.contig_35157.1
N
0.771
evm.TU.contig_35157.2
Carica papaya
evm.TU.contig_35157.2
N
0.750
evm.TU.contig_35713
Carica papaya
evm.TU.contig_35713
N
0.833
evm.TU.contig_35751
Carica papaya
evm.TU.contig_35751
N
0.833
evm.TU.contig_37082
Carica papaya
evm.TU.contig_37082
N
0.771
evm.TU.contig_37271
Carica papaya
evm.TU.contig_37271
N
0.833
evm.TU.contig_37489
Carica papaya
evm.TU.contig_37489
N
0.750
evm.TU.contig_37718
Carica papaya
evm.TU.contig_37718
N
0.708
evm.TU.contig_37906
Carica papaya
evm.TU.contig_37906
N
0.708
evm.TU.contig_38155.1
Carica papaya
evm.TU.contig_38155.1
N
0.729
evm.TU.contig_38604
Carica papaya
evm.TU.contig_38604
N
0.729
evm.TU.contig_41623
Carica papaya
evm.TU.contig_41623
N
0.812
evm.TU.contig_46312
Carica papaya
evm.TU.contig_46312
N
0.750
evm.TU.supercontig_106.18
Carica papaya
evm.TU.supercontig_106.18
N
0.875
evm.TU.supercontig_106.19
Carica papaya
evm.TU.supercontig_106.19
N
0.833
evm.TU.supercontig_106.20
Carica papaya
evm.TU.supercontig_106.20
N
0.812
evm.TU.supercontig_1259.1
Carica papaya
evm.TU.supercontig_1259.1
N
0.771
evm.TU.supercontig_1455.2
Carica papaya
evm.TU.supercontig_1455.2
N
0.812
evm.TU.supercontig_20.86
Carica papaya
evm.TU.supercontig_20.86
N
0.729
evm.TU.supercontig_347.10
Carica papaya
evm.TU.supercontig_347.10
N
0.771
evm.TU.supercontig_347.11
Carica papaya
evm.TU.supercontig_347.11
N
0.812
evm.TU.supercontig_347.14
Carica papaya
evm.TU.supercontig_347.14
N
0.708
evm.TU.supercontig_347.2
Carica papaya
evm.TU.supercontig_347.2
N
0.771
evm.TU.supercontig_347.7
Carica papaya
evm.TU.supercontig_347.7
N
0.833
evm.TU.supercontig_347.8
Carica papaya
evm.TU.supercontig_347.8
N
0.792
evm.TU.supercontig_348.3
Carica papaya
evm.TU.supercontig_348.3
N
0.771
evm.TU.supercontig_348.4
Carica papaya
evm.TU.supercontig_348.4
N
0.812
evm.TU.supercontig_348.8
Carica papaya
evm.TU.supercontig_348.8
N
0.812
evm.TU.supercontig_348.9
Carica papaya
evm.TU.supercontig_348.9
N
0.729
evm.TU.supercontig_439.1
Carica papaya
evm.TU.supercontig_439.1
N
0.729
evm.TU.supercontig_439.7
Carica papaya
evm.TU.supercontig_439.7
N
0.812
evm.TU.supercontig_505.2
Carica papaya
evm.TU.supercontig_505.2
N
0.812
evm.TU.supercontig_505.4
Carica papaya
evm.TU.supercontig_505.4
N
0.833
evm.TU.supercontig_505.5
Carica papaya
evm.TU.supercontig_505.5
N
0.771
evm.TU.supercontig_505.6
Carica papaya
evm.TU.supercontig_505.6
N
0.771
evm.TU.supercontig_54.67
Carica papaya
evm.TU.supercontig_54.67
N
0.771
evm.TU.supercontig_54.68
Carica papaya
evm.TU.supercontig_54.68
N
0.833
evm.TU.supercontig_625.4
Carica papaya
evm.TU.supercontig_625.4
N
0.833
evm.TU.supercontig_654.4
Carica papaya
evm.TU.supercontig_654.4
N
0.812
evm.TU.supercontig_654.5
Carica papaya
evm.TU.supercontig_654.5
N
0.771
evm.TU.supercontig_654.6
Carica papaya
evm.TU.supercontig_654.6
N
0.833
evm.TU.supercontig_695.1
Carica papaya
evm.TU.supercontig_695.1
N
0.812
evm.TU.supercontig_695.5
Carica papaya
evm.TU.supercontig_695.5
N
0.812
evm.TU.supercontig_695.7
Carica papaya
evm.TU.supercontig_695.7
N
0.812
evm.TU.supercontig_695.8
Carica papaya
evm.TU.supercontig_695.8
N
0.708
evm.TU.supercontig_758.1
Carica papaya
evm.TU.supercontig_758.1
N
0.792
evm.TU.supercontig_758.2
Carica papaya
evm.TU.supercontig_758.2
N
0.812
evm.TU.supercontig_758.4
Carica papaya
evm.TU.supercontig_758.4
N
0.812
evm.TU.supercontig_851.1
Carica papaya
evm.TU.supercontig_851.1
N
0.750
AGL62
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_8002041
N
0.896
fgenesh1_pm.C_scaffold_7000337
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_7000337
N
0.812
gene01788-v1.0-hybrid
Fragaria vesca
gene01788-v1.0-hybrid
I
0.729
gene01789-v1.0-hybrid
Fragaria vesca
gene01789-v1.0-hybrid
N
0.854
GLYMA02G35080
Glycine max
GLYMA02G35080
N
0.702
GLYMA10G10295
Glycine max
GLYMA10G10295
N
0.708
GLYMA10G10610
Glycine max
GLYMA10G10610
N
0.729
GLYMA10G10640
Glycine max
GLYMA10G10640
N
0.750
GLYMA10G10690
Glycine max
GLYMA10G10690
N
0.729
GLYMA10G10770
Glycine max
GLYMA10G10770
N
0.750
GLYMA10G10840
Glycine max
GLYMA10G10840
N
0.771
GLYMA10G10860
Glycine max
GLYMA10G10860
N
0.771
GLYMA10G10900
Glycine max
GLYMA10G10900
N
0.750
GLYMA10G10920
Glycine max
GLYMA10G10920
N
0.729
GLYMA10G10930
Glycine max
GLYMA10G10930
N
0.771
GLYMA10G11450
Glycine max
GLYMA10G11450
N
0.750
GLYMA10G40060
Glycine max
GLYMA10G40060
N
0.729
GLYMA10G40070
Glycine max
GLYMA10G40070
N
0.938
GLYMA10G40080
Glycine max
GLYMA10G40080
N
0.938
GLYMA13G39016
Glycine max
GLYMA13G39016
N
0.896
GLYMA20G27320
Glycine max
GLYMA20G27320
N
0.979
GLYMA20G27330
Glycine max
GLYMA20G27330
N
1.000
GLYMA20G27341
Glycine max
GLYMA20G27341
N
0.938
GLYMA20G27350
Glycine max
GLYMA20G27350
N
0.750
Gorai.002G213500
Gossypium raimondii
Gorai.002G213500
N
0.812
Gorai.005G263100
Gossypium raimondii
Gorai.005G263100
N
0.812
Gorai.006G127800
Gossypium raimondii
Gorai.006G127800
N
0.750
LjSGA_025167.1
Lotus japonicus
LjSGA_025167.1
N
0.792
LjSGA_042140.1
Lotus japonicus
LjSGA_042140.1
N
0.729
LjSGA_067087.1
Lotus japonicus
LjSGA_067087.1
N
0.708
LjSGA_079719.1
Lotus japonicus
LjSGA_079719.1
N
0.750
LjT01D09.100.nd
Lotus japonicus
LjT01D09.100.nd
N
0.708
Lus10012449.g
Linum usitatissimum
Lus10012449.g
N
0.750
Lus10020511.g
Linum usitatissimum
Lus10020511.g
N
0.771
Lus10030663.g
Linum usitatissimum
Lus10030663.g
N
0.708
Lus10031073.g
Linum usitatissimum
Lus10031073.g
N
0.750
Lus10035456.g
Linum usitatissimum
Lus10035456.g
N
0.750
MDP0000168914
Malus domestica
MDP0000168914
N
0.729
MDP0000221590
Malus domestica
MDP0000221590
N
0.812
MDP0000233925
Malus domestica
MDP0000233925
N
0.854
MDP0000278770
Malus domestica
MDP0000278770
N
0.854
MDP0000434703
Malus domestica
MDP0000434703
I
0.875
mgf018529m
Mimulus guttatus
mgf018529m
N
0.729
mgf022147m
Mimulus guttatus
mgf022147m
N
0.750
mgf022790m
Mimulus guttatus
mgf022790m
N
0.792
mgf024307m
Mimulus guttatus
mgf024307m
N
0.729
MTR_0121s0080
Medicago truncatula
MTR_0121s0080
N
0.854
MTR_0121s0100
Medicago truncatula
MTR_0121s0100
N
0.833
MTR_1g012570
Medicago truncatula
MTR_1g012570
N
0.958
MTR_1g075570
Medicago truncatula
MTR_1g075570
N
0.800
MTR_1g075600
Medicago truncatula
MTR_1g075600
N
0.896
MTR_1g077360
Medicago truncatula
MTR_1g077360
N
0.896
MTR_1g105905
Medicago truncatula
MTR_1g105905
N
0.958
MTR_1g105910
Medicago truncatula
MTR_1g105910
N
1.000
MTR_1g106070
Medicago truncatula
MTR_1g106070
N
0.742
MTR_1g108500
Medicago truncatula
MTR_1g108500
N
0.864
MTR_1g108510
Medicago truncatula
MTR_1g108510
N
0.938
MTR_1g108580
Medicago truncatula
MTR_1g108580
N
0.875
MTR_2g030740
Medicago truncatula
MTR_2g030740
N
0.938
MTR_2g085250
Medicago truncatula
MTR_2g085250
N
0.896
MTR_2g085280
Medicago truncatula
MTR_2g085280
N
0.896
MTR_2g093190
Medicago truncatula
MTR_2g093190
N
0.896
MTR_3g030770
Medicago truncatula
MTR_3g030770
N
0.938
MTR_3g052870
Medicago truncatula
MTR_3g052870
N
1.000
MTR_3g052920
Medicago truncatula
MTR_3g052920
N
0.958
MTR_3g067870
Medicago truncatula
MTR_3g067870
N
0.745
MTR_3g067875
Medicago truncatula
MTR_3g067875
N
0.854
MTR_3g067910
Medicago truncatula
MTR_3g067910
N
0.729
MTR_3g080940
Medicago truncatula
MTR_3g080940
N
0.750
MTR_4g036915
Medicago truncatula
MTR_4g036915
I
0.708
MTR_5g045560
Medicago truncatula
MTR_5g045560
N
0.938
MTR_5g053390
Medicago truncatula
MTR_5g053390
N
0.875
MTR_5g055100
Medicago truncatula
MTR_5g055100
N
0.875
MTR_7g028448
Medicago truncatula
MTR_7g028448
I
0.708
MTR_8g043650
Medicago truncatula
MTR_8g043650
N
1.000
orange1.1g039654m.g
Citrus sinensis
orange1.1g039654m.g
N
0.875
orange1.1g045481m.g
Citrus sinensis
orange1.1g045481m.g
N
0.708
PGSC0003DMG400005131
Solanum tuberosum
PGSC0003DMG400005131
N
0.854
PGSC0003DMG400035221
Solanum tuberosum
PGSC0003DMG400035221
N
0.708
PGSC0003DMG400036160
Solanum tuberosum
PGSC0003DMG400036160
N
0.729
PGSC0003DMG400036190
Solanum tuberosum
PGSC0003DMG400036190
N
0.702
PGSC0003DMG400039835
Solanum tuberosum
PGSC0003DMG400039835
N
0.708
PGSC0003DMG400040127
Solanum tuberosum
PGSC0003DMG400040127
N
0.708
PGSC0003DMG400041035
Solanum tuberosum
PGSC0003DMG400041035
N
0.750
PGSC0003DMG400044387
Solanum tuberosum
PGSC0003DMG400044387
N
0.729
PGSC0003DMG400044513
Solanum tuberosum
PGSC0003DMG400044513
N
0.708
PGSC0003DMG400045239
Solanum tuberosum
PGSC0003DMG400045239
N
0.708
PGSC0003DMG400046706
Solanum tuberosum
PGSC0003DMG400046706
N
0.702
PGSC0003DMG400046733
Solanum tuberosum
PGSC0003DMG400046733
N
0.723
Pm016629
Prunus mume
Pm016629
N
0.729
Pm021017
Prunus mume
Pm021017
N
0.750
Pm021018
Prunus mume
Pm021018
N
0.812
Pm021070
Prunus mume
Pm021070
N
0.750
Pm021071
Prunus mume
Pm021071
N
0.896
POPTR_0007s03410
Populus trichocarpa
POPTR_0007s03410
N
0.714
POPTR_0007s03430
Populus trichocarpa
POPTR_0007s03430
N
0.812
POPTR_0008s04110
Populus trichocarpa
POPTR_0008s04110
N
0.708
POPTR_0009s08740
Populus trichocarpa
POPTR_0009s08740
N
0.729
POPTR_0009s08750
Populus trichocarpa
POPTR_0009s08750
N
0.833
POPTR_0017s06710
Populus trichocarpa
POPTR_0017s06710
N
0.708
POPTR_0017s06800
Populus trichocarpa
POPTR_0017s06800
N
0.708
POPTR_0017s07460
Populus trichocarpa
POPTR_0017s07460
N
0.833
PRUPE_ppa017246mg
Prunus persica
PRUPE_ppa017246mg
N
0.750
PRUPE_ppa022494mg
Prunus persica
PRUPE_ppa022494mg
N
0.750
PRUPE_ppa023670mg
Prunus persica
PRUPE_ppa023670mg
N
0.729
PRUPE_ppa026089mg
Prunus persica
PRUPE_ppa026089mg
N
0.812
PRUPE_ppa026127mg
Prunus persica
PRUPE_ppa026127mg
N
0.896
SapurV1A.0019s0690
Salix purpurea
SapurV1A.0019s0690
N
0.854
SapurV1A.0019s0700
Salix purpurea
SapurV1A.0019s0700
N
0.729
SapurV1A.0808s0160
Salix purpurea
SapurV1A.0808s0160
N
0.812
SapurV1A.1313s0050
Salix purpurea
SapurV1A.1313s0050
N
0.833
scaffold_302326.1
Arabidopsis lyrata
scaffold_302326.1
I
0.812
scaffold_400572.1
Arabidopsis lyrata
scaffold_400572.1
N
0.708
Solyc01g060300.1
Solanum lycopersicum
Solyc01g060300.1
N
0.702
Solyc01g060310.1
Solanum lycopersicum
Solyc01g060310.1
N
0.708
Solyc01g106710.1
Solanum lycopersicum
Solyc01g106710.1
N
0.729
Solyc01g106720.1
Solanum lycopersicum
Solyc01g106720.1
N
0.854
Solyc01g106730.1
Solanum lycopersicum
Solyc01g106730.1
N
0.854
TCM_006323
Theobroma cacao
TCM_006323
N
0.833
TCM_006324
Theobroma cacao
TCM_006324
N
0.729
TCM_029518
Theobroma cacao
TCM_029518
I
0.708
TCM_040735
Theobroma cacao
TCM_040735
N
0.771
Thhalv10000432m.g
Eutrema salsugineum
Thhalv10000432m.g
N
0.729
Thhalv10000479m.g
Eutrema salsugineum
Thhalv10000479m.g
N
0.729
Thhalv10003338m.g
Eutrema salsugineum
Thhalv10003338m.g
N
0.729
Thhalv10003426m.g
Eutrema salsugineum
Thhalv10003426m.g
N
0.792
Thhalv10012100m.g
Eutrema salsugineum
Thhalv10012100m.g
I
0.789
Thhalv10015908m.g
Eutrema salsugineum
Thhalv10015908m.g
N
0.854
Thhalv10017754m.g
Eutrema salsugineum
Thhalv10017754m.g
N
0.729
Thhalv10022102m.g
Eutrema salsugineum
Thhalv10022102m.g
N
0.875
Thhalv10027307m.g
Eutrema salsugineum
Thhalv10027307m.g
N
0.812
Traes_7DS_366A869CF
Triticum aestivum
Traes_7DS_366A869CF
I
0.707
VIT_01s0010g01500
Vitis vinifera
VIT_01s0010g01500
N
0.812
VIT_01s0010g01530
Vitis vinifera
VIT_01s0010g01530
N
0.771
VIT_03s0088g00510
Vitis vinifera
VIT_03s0088g00510
N
0.812
VIT_03s0088g00550
Vitis vinifera
VIT_03s0088g00550
N
0.833
VIT_03s0088g00590
Vitis vinifera
VIT_03s0088g00590
N
0.771
VIT_03s0088g00600
Vitis vinifera
VIT_03s0088g00600
N
0.812
VIT_03s0088g00610
Vitis vinifera
VIT_03s0088g00610
N
0.750