VIT_03s0088g00600 (Vitis vinifera)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 VIT_03s0088g00600 T256780_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_03s0088g00600.t01 MADS box 17 64

Links

Other MADS box family TFs
Other Vitis vinifera TFs

238 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL62 Arabidopsis thaliana AT5G60440 I 0.854
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.833
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.812
MDP0000434703 Malus domestica MDP0000434703 I 0.854
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.789
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.875
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.812
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.792
AGL28 Arabidopsis thaliana AT1G01530 N 0.854
AGL23 Arabidopsis thaliana AT1G65360 N 0.771
AGL61 Arabidopsis thaliana AT2G24840 N 0.792
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.792
Bo1g112460 Brassica oleracea Bo1g112460 N 0.812
Bo2g024870 Brassica oleracea Bo2g024870 N 0.729
Bo2g024910 Brassica oleracea Bo2g024910 N 0.750
Bo4g070340 Brassica oleracea Bo4g070340 N 0.723
Bo4g157220 Brassica oleracea Bo4g157220 N 0.729
Bo4g165540 Brassica oleracea Bo4g165540 N 0.750
Bo5g113750 Brassica oleracea Bo5g113750 N 0.812
Bo8g099550 Brassica oleracea Bo8g099550 N 0.750
Bo9g142570 Brassica oleracea Bo9g142570 N 0.812
Bra002480 Brassica rapa Bra002480 N 0.833
Bra007829 Brassica rapa Bra007829 N 0.750
Bra011938 Brassica rapa Bra011938 N 0.729
Bra020247 Brassica rapa Bra020247 N 0.771
Bra022434 Brassica rapa Bra022434 N 0.792
Bra026764 Brassica rapa Bra026764 N 0.771
Bra032057 Brassica rapa Bra032057 N 0.729
Bra035685 Brassica rapa Bra035685 N 0.708
Bra038225 Brassica rapa Bra038225 N 0.792
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.854
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.792
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.729
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.771
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.771
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.792
GLYMA17G01771 Glycine max GLYMA17G01771 N 0.729
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.833
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.812
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.812
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.771
GLYMA20G27361 Glycine max GLYMA20G27361 N 0.708
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.750
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.812
MTR_1g075570 Medicago truncatula MTR_1g075570 N 0.733
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.812
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.812
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.771
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.812
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.812
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.705
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.792
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.708
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.792
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.792
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.792
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.750
MTR_2g105290 Medicago truncatula MTR_2g105290 N 0.708
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.792
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.812
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.812
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.729
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.771
MTR_4g127140 Medicago truncatula MTR_4g127140 N 0.708
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.812
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.750
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.771
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.812
MTR_8g086290 Medicago truncatula MTR_8g086290 N 0.708
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.833
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.708
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.723
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.708
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.708
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.771
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.750
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.708
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.812
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.708
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.708
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.854
POPTR_0016s12640 Populus trichocarpa POPTR_0016s12640 N 0.723
POPTR_0016s12650 Populus trichocarpa POPTR_0016s12650 N 0.702
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.833
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.812
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.750
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.750
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.833
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.875
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.771
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.750
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.833
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.812
TCM_006323 Theobroma cacao TCM_006323 N 0.833
TCM_006324 Theobroma cacao TCM_006324 N 0.750
TCM_040735 Theobroma cacao TCM_040735 N 0.750
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.938
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.875
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.958
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.917
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.771
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.750
Ca_04658 Cicer arietinum Ca_04658 N 0.708
Ca_04659 Cicer arietinum Ca_04659 N 0.833
Ca_04660 Cicer arietinum Ca_04660 N 0.833
Ca_04661 Cicer arietinum Ca_04661 N 0.792
Ca_04662 Cicer arietinum Ca_04662 N 0.771
Ca_04665 Cicer arietinum Ca_04665 N 0.833
Ca_07607 Cicer arietinum Ca_07607 N 0.771
Ca_26354 Cicer arietinum Ca_26354 N 0.771
Cla006571 Citrullus lanatus Cla006571 N 0.896
Pm016629 Prunus mume Pm016629 N 0.750
Pm021017 Prunus mume Pm021017 N 0.750
Pm021018 Prunus mume Pm021018 N 0.833
Pm021070 Prunus mume Pm021070 N 0.812
Pm021071 Prunus mume Pm021071 N 0.875
29613.m000367 Ricinus communis 29613.m000367 N 0.771
29838.m001672 Ricinus communis 29838.m001672 N 0.750
30099.m001671 Ricinus communis 30099.m001671 N 0.729
30099.m001672 Ricinus communis 30099.m001672 N 0.875
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.792
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.729
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.875
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.729
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.771
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.896
Cucsa.342610 Cucumis sativus Cucsa.342610 N 0.708
mgf018529m Mimulus guttatus mgf018529m N 0.750
mgf022147m Mimulus guttatus mgf022147m N 0.750
mgf022790m Mimulus guttatus mgf022790m N 0.750
mgf024307m Mimulus guttatus mgf024307m N 0.750
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.875
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.812
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.812
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.812
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.792
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.771
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.771
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.875
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.771
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.771
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.792
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.875
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.854
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.729
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.729
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.812
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.812
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.729
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.812
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.771
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.729
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.812
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.792
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.812
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.792
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.812
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.812
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.708
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.771
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.708
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.833
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.833
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.729
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.833
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.729
evm.TU.contig_41453 Carica papaya evm.TU.contig_41453 N 0.717
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.792
evm.TU.contig_46312 Carica papaya evm.TU.contig_46312 N 0.708
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.833
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.792
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.771
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.771
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.812
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.750
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.729
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.812
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.729
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.833
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.792
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.771
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.812
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.812
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.708
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.750
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.792
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.812
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.812
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.729
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.771
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.729
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.792
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.833
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.812
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.729
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.833
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.812
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.792
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.812
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.750
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.812
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.812
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.771
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.854
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.833
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.812
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.750
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.812
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.833
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.750
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.771
MDP0000168914 Malus domestica MDP0000168914 N 0.792
MDP0000221590 Malus domestica MDP0000221590 N 0.792
MDP0000233925 Malus domestica MDP0000233925 N 0.833
MDP0000278770 Malus domestica MDP0000278770 N 0.833
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.854
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.875
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.729
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.771
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.833
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.708
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.812
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.812
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.812
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.833
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.729
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.833
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.792
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.792
chr1.LjB17A22.60.nc Lotus japonicus chr1.LjB17A22.60.nc N 0.729
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.792
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.792
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.708
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.792
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.750
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.750
LjSGA_074894.2 Lotus japonicus LjSGA_074894.2 N 0.708
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.771