orange1.1g036705m.g (Citrus sinensis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 orange1.1g036705m.g T258809_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g036705m MADS box 17 64

Links

Other MADS box family TFs
Other Citrus sinensis TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27866.m000233 Ricinus communis 27866.m000233 N
29613.m000367 Ricinus communis 29613.m000367 N 0.833
29838.m001672 Ricinus communis 29838.m001672 N 0.729
30099.m001671 Ricinus communis 30099.m001671 N 0.833
30099.m001672 Ricinus communis 30099.m001672 N 0.750
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.750
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.729
AGL28 Arabidopsis thaliana AT1G01530 N
AGL23 Arabidopsis thaliana AT1G65360 N
AGL61 Arabidopsis thaliana AT2G24840 N 0.750
AT4G36590 Arabidopsis thaliana AT4G36590 N
AGL62 Arabidopsis thaliana AT5G60440 I
Bo1g112460 Brassica oleracea Bo1g112460 N
Bo2g024910 Brassica oleracea Bo2g024910 N
Bo4g070340 Brassica oleracea Bo4g070340 N
Bo4g165540 Brassica oleracea Bo4g165540 N
Bo5g113750 Brassica oleracea Bo5g113750 N 0.708
Bo8g099550 Brassica oleracea Bo8g099550 N 0.729
Bo9g142570 Brassica oleracea Bo9g142570 N
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.708
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.771
Bra002480 Brassica rapa Bra002480 N
Bra007829 Brassica rapa Bra007829 N 0.729
Bra011938 Brassica rapa Bra011938 N
Bra020247 Brassica rapa Bra020247 N
Bra022434 Brassica rapa Bra022434 N
Bra026764 Brassica rapa Bra026764 N 0.729
Bra032057 Brassica rapa Bra032057 N 0.708
Bra035685 Brassica rapa Bra035685 N
Bra038225 Brassica rapa Bra038225 N
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.750
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.708
Carubv10007644m.g Capsella rubella Carubv10007644m.g N
Carubv10010156m.g Capsella rubella Carubv10010156m.g N
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.750
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.708
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.750
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.729
cassava27416.m1 Manihot esculenta cassava27416.m1 N
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.708
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.812
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.729
Ca_04659 Cicer arietinum Ca_04659 N
Ca_04660 Cicer arietinum Ca_04660 N
Ca_04661 Cicer arietinum Ca_04661 N
Ca_04662 Cicer arietinum Ca_04662 N
Ca_04665 Cicer arietinum Ca_04665 N
Ca_07607 Cicer arietinum Ca_07607 N 0.833
Ca_26354 Cicer arietinum Ca_26354 N 0.833
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.833
chr1.LjB17A22.10.nc Lotus japonicus chr1.LjB17A22.10.nc N
chr1.LjB17A22.60.nc Lotus japonicus chr1.LjB17A22.60.nc N
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.729
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.917
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.771
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 1.000
Cla006571 Citrullus lanatus Cla006571 N 0.729
Cla010744 Citrullus lanatus Cla010744 N
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.729
Cucsa.342610 Cucumis sativus Cucsa.342610 N
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.854
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.729
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.708
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.729
evm.TU.contig_26687.1 Carica papaya evm.TU.contig_26687.1 N
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.708
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.729
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.729
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.708
evm.TU.contig_28241.3 Carica papaya evm.TU.contig_28241.3 N
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.708
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.708
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.708
evm.TU.contig_31285.2 Carica papaya evm.TU.contig_31285.2 N
evm.TU.contig_31904 Carica papaya evm.TU.contig_31904 N
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.708
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.708
evm.TU.contig_34259 Carica papaya evm.TU.contig_34259 N
evm.TU.contig_34792.1 Carica papaya evm.TU.contig_34792.1 N
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.708
evm.TU.contig_35176.1 Carica papaya evm.TU.contig_35176.1 N
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.729
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.729
evm.TU.contig_36403 Carica papaya evm.TU.contig_36403 N
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.708
evm.TU.contig_37107 Carica papaya evm.TU.contig_37107 N
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.729
evm.TU.contig_37489 Carica papaya evm.TU.contig_37489 N
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N
evm.TU.contig_38329 Carica papaya evm.TU.contig_38329 N
evm.TU.contig_38552 Carica papaya evm.TU.contig_38552 N
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N
evm.TU.contig_41453 Carica papaya evm.TU.contig_41453 N
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N
evm.TU.contig_41894.2 Carica papaya evm.TU.contig_41894.2 N
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.729
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.708
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.708
evm.TU.supercontig_106.21 Carica papaya evm.TU.supercontig_106.21 N
evm.TU.supercontig_109.50 Carica papaya evm.TU.supercontig_109.50 N
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.792
evm.TU.supercontig_2423.2 Carica papaya evm.TU.supercontig_2423.2 N
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.708
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.729
evm.TU.supercontig_347.13 Carica papaya evm.TU.supercontig_347.13 N
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.729
evm.TU.supercontig_347.4 Carica papaya evm.TU.supercontig_347.4 N
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.729
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N
evm.TU.supercontig_348.1 Carica papaya evm.TU.supercontig_348.1 N
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.708
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.708
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.729
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.708
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.729
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.708
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.750
evm.TU.supercontig_625.2 Carica papaya evm.TU.supercontig_625.2 N
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.729
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.729
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.708
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.729
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.708
evm.TU.supercontig_695.2 Carica papaya evm.TU.supercontig_695.2 N
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.708
evm.TU.supercontig_695.6 Carica papaya evm.TU.supercontig_695.6 N
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.708
evm.TU.supercontig_695.8 Carica papaya evm.TU.supercontig_695.8 N
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.729
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.708
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.708
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.708
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.750
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.708
GLYMA10G10610 Glycine max GLYMA10G10610 N
GLYMA10G10640 Glycine max GLYMA10G10640 N
GLYMA10G10690 Glycine max GLYMA10G10690 N
GLYMA10G10770 Glycine max GLYMA10G10770 N
GLYMA10G10840 Glycine max GLYMA10G10840 N
GLYMA10G10860 Glycine max GLYMA10G10860 N
GLYMA10G10900 Glycine max GLYMA10G10900 N
GLYMA10G10920 Glycine max GLYMA10G10920 N
GLYMA10G10930 Glycine max GLYMA10G10930 N
GLYMA10G11450 Glycine max GLYMA10G11450 N
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.812
GLYMA10G40070 Glycine max GLYMA10G40070 N
GLYMA10G40080 Glycine max GLYMA10G40080 N
GLYMA13G39016 Glycine max GLYMA13G39016 N
GLYMA20G27320 Glycine max GLYMA20G27320 N
GLYMA20G27330 Glycine max GLYMA20G27330 N
GLYMA20G27341 Glycine max GLYMA20G27341 N
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.833
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.750
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.708
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.833
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.812
LjSGA_067087.1 Lotus japonicus LjSGA_067087.1 N
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.833
LjSGA_082681.2 Lotus japonicus LjSGA_082681.2 N
LjSGA_120826.2 Lotus japonicus LjSGA_120826.2 N
LjT01D09.100.nd Lotus japonicus LjT01D09.100.nd N
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.750
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.729
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.729
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.750
Lus10031073.g Linum usitatissimum Lus10031073.g N
Lus10035456.g Linum usitatissimum Lus10035456.g N
MDP0000168914 Malus domestica MDP0000168914 N 0.833
MDP0000221590 Malus domestica MDP0000221590 N
MDP0000233925 Malus domestica MDP0000233925 N
MDP0000278770 Malus domestica MDP0000278770 N
MDP0000434703 Malus domestica MDP0000434703 I
mgf018529m Mimulus guttatus mgf018529m N 0.812
mgf022147m Mimulus guttatus mgf022147m N
mgf022625m Mimulus guttatus mgf022625m N
mgf022790m Mimulus guttatus mgf022790m N
mgf024307m Mimulus guttatus mgf024307m N 0.812
MTR_1g012570 Medicago truncatula MTR_1g012570 N
MTR_1g075600 Medicago truncatula MTR_1g075600 N
MTR_1g077360 Medicago truncatula MTR_1g077360 N
MTR_1g105905 Medicago truncatula MTR_1g105905 N
MTR_1g105910 Medicago truncatula MTR_1g105910 N
MTR_1g105920 Medicago truncatula MTR_1g105920 N
MTR_1g108510 Medicago truncatula MTR_1g108510 N
MTR_1g108580 Medicago truncatula MTR_1g108580 N
MTR_2g030740 Medicago truncatula MTR_2g030740 N
MTR_2g085250 Medicago truncatula MTR_2g085250 N
MTR_2g085280 Medicago truncatula MTR_2g085280 N
MTR_2g093190 Medicago truncatula MTR_2g093190 N
MTR_3g030770 Medicago truncatula MTR_3g030770 N
MTR_3g052870 Medicago truncatula MTR_3g052870 N
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.708
MTR_3g067875 Medicago truncatula MTR_3g067875 N
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.854
MTR_5g045560 Medicago truncatula MTR_5g045560 N
MTR_5g053390 Medicago truncatula MTR_5g053390 N
MTR_5g055100 Medicago truncatula MTR_5g055100 N
MTR_8g043650 Medicago truncatula MTR_8g043650 N
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.771
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.917
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N
PGSC0003DMG400006290 Solanum tuberosum PGSC0003DMG400006290 N
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.792
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.812
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N
Pm016629 Prunus mume Pm016629 N 0.729
Pm021017 Prunus mume Pm021017 N
Pm021018 Prunus mume Pm021018 N 0.708
Pm021070 Prunus mume Pm021070 N 0.792
Pm021071 Prunus mume Pm021071 N
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.854
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.875
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.750
POPTR_0016s12650 Populus trichocarpa POPTR_0016s12650 N
POPTR_0017s06710 Populus trichocarpa POPTR_0017s06710 N
POPTR_0017s06800 Populus trichocarpa POPTR_0017s06800 N
POPTR_0017s06810 Populus trichocarpa POPTR_0017s06810 N
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.792
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.729
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.708
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.771
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.833
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N
SapurV1A.1128s0080 Salix purpurea SapurV1A.1128s0080 N 0.812
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.750
Solyc01g060300.1 Solanum lycopersicum Solyc01g060300.1 N
Solyc01g060310.1 Solanum lycopersicum Solyc01g060310.1 N
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.812
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N
Solyc04g047870.1 Solanum lycopersicum Solyc04g047870.1 N
TCM_006323 Theobroma cacao TCM_006323 N 0.708
TCM_040735 Theobroma cacao TCM_040735 N 0.833
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.771
Thhalv10003315m.g Eutrema salsugineum Thhalv10003315m.g N
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.771
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.750
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.708
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.708
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.708
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.833
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.792