gene01789-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene01789-v1.0-hybrid T258296_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
mrna01789.1-v1.0-hybrid MADS box 15 62

Links

Other MADS box family TFs
Other Fragaria vesca TFs

271 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29613.m000367 Ricinus communis 29613.m000367 N 0.792
29838.m001672 Ricinus communis 29838.m001672 N 0.729
30099.m001671 Ricinus communis 30099.m001671 N 0.750
30099.m001672 Ricinus communis 30099.m001672 N 0.917
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.875
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.854
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.771
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.708
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.729
AGL28 Arabidopsis thaliana AT1G01530 N 0.833
AGL23 Arabidopsis thaliana AT1G65360 N 0.771
AGL61 Arabidopsis thaliana AT2G24840 N 0.771
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.854
AGL62 Arabidopsis thaliana AT5G60440 I 0.917
Bo1g112460 Brassica oleracea Bo1g112460 N 0.896
Bo2g024910 Brassica oleracea Bo2g024910 N 0.729
Bo4g070340 Brassica oleracea Bo4g070340 N 0.766
Bo4g165540 Brassica oleracea Bo4g165540 N 0.833
Bo5g113750 Brassica oleracea Bo5g113750 N 0.854
Bo8g099550 Brassica oleracea Bo8g099550 N 0.729
Bo9g142570 Brassica oleracea Bo9g142570 N 0.833
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.958
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.854
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.875
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.792
Bra002480 Brassica rapa Bra002480 N 0.854
Bra007829 Brassica rapa Bra007829 N 0.729
Bra011938 Brassica rapa Bra011938 N 0.771
Bra020247 Brassica rapa Bra020247 N 0.729
Bra022434 Brassica rapa Bra022434 N 0.833
Bra026764 Brassica rapa Bra026764 N 0.729
Bra032057 Brassica rapa Bra032057 N 0.708
Bra035685 Brassica rapa Bra035685 N 0.792
Bra038225 Brassica rapa Bra038225 N 0.875
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.771
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.812
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.812
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.958
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.812
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.812
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.771
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.958
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.792
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.750
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.896
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.750
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.771
Ca_04658 Cicer arietinum Ca_04658 N 0.708
Ca_04659 Cicer arietinum Ca_04659 N 0.875
Ca_04660 Cicer arietinum Ca_04660 N 0.875
Ca_04661 Cicer arietinum Ca_04661 N 0.833
Ca_04662 Cicer arietinum Ca_04662 N 0.812
Ca_04665 Cicer arietinum Ca_04665 N 0.875
Ca_07607 Cicer arietinum Ca_07607 N 0.792
Ca_26354 Cicer arietinum Ca_26354 N 0.792
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.833
chr1.LjB17A22.10.nc Lotus japonicus chr1.LjB17A22.10.nc N 0.708
chr1.LjB17A22.60.nc Lotus japonicus chr1.LjB17A22.60.nc N 0.729
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.833
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.896
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.708
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.792
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.708
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.896
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.708
Cla006571 Citrullus lanatus Cla006571 N 0.938
Cla010744 Citrullus lanatus Cla010744 N 0.708
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.938
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.771
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.771
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.833
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.875
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.750
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.875
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.854
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.750
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.875
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.854
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.896
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.854
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.875
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.875
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.729
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.833
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.729
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.896
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.896
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.750
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.896
evm.TU.contig_38155.1 Carica papaya evm.TU.contig_38155.1 N 0.708
evm.TU.contig_38604 Carica papaya evm.TU.contig_38604 N 0.812
evm.TU.contig_41453 Carica papaya evm.TU.contig_41453 N 0.708
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.875
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.917
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.875
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.833
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.833
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.875
evm.TU.supercontig_20.85 Carica papaya evm.TU.supercontig_20.85 N 0.708
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.792
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.750
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.896
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.750
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.896
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.854
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.854
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.875
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.896
evm.TU.supercontig_348.9 Carica papaya evm.TU.supercontig_348.9 N 0.729
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N 0.812
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.854
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.896
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.875
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.750
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.854
evm.TU.supercontig_54.67 Carica papaya evm.TU.supercontig_54.67 N 0.833
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.896
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.917
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.896
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.750
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.896
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.875
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.854
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.875
evm.TU.supercontig_695.8 Carica papaya evm.TU.supercontig_695.8 N 0.708
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.771
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.896
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.875
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.833
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.938
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.854
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.792
gene07364-v1.0-hybrid Fragaria vesca gene07364-v1.0-hybrid N 0.750
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.708
GLYMA10G10770 Glycine max GLYMA10G10770 N 0.708
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.729
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.729
GLYMA10G10900 Glycine max GLYMA10G10900 N 0.708
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.729
GLYMA10G11450 Glycine max GLYMA10G11450 N 0.708
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.750
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.854
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.812
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.812
GLYMA17G01771 Glycine max GLYMA17G01771 N 0.708
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.875
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.854
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.854
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.792
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.875
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.896
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.812
Gorai.012G163200 Gossypium raimondii Gorai.012G163200 N 0.708
Gorai.N026300 Gossypium raimondii Gorai.N026300 N 0.708
LjSGA_020620.1 Lotus japonicus LjSGA_020620.1 N 0.708
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.792
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.771
LjSGA_067087.1 Lotus japonicus LjSGA_067087.1 N 0.729
LjSGA_074894.2 Lotus japonicus LjSGA_074894.2 N 0.708
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.792
LjSGA_082681.2 Lotus japonicus LjSGA_082681.2 N 0.708
LjSGA_120826.2 Lotus japonicus LjSGA_120826.2 N 0.708
LjT01D09.100.nd Lotus japonicus LjT01D09.100.nd N 0.729
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.854
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.875
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.771
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.750
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.771
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.750
MDP0000168914 Malus domestica MDP0000168914 N 0.812
MDP0000221590 Malus domestica MDP0000221590 N 0.812
MDP0000233925 Malus domestica MDP0000233925 N 0.917
MDP0000274606 Malus domestica MDP0000274606 N 0.708
MDP0000278770 Malus domestica MDP0000278770 N 0.917
MDP0000434703 Malus domestica MDP0000434703 I 0.938
mgf018529m Mimulus guttatus mgf018529m N 0.812
mgf022147m Mimulus guttatus mgf022147m N 0.771
mgf022625m Mimulus guttatus mgf022625m N 0.750
mgf022790m Mimulus guttatus mgf022790m N 0.750
mgf024307m Mimulus guttatus mgf024307m N 0.812
MTR_0121s0080 Medicago truncatula MTR_0121s0080 N 0.729
MTR_0121s0100 Medicago truncatula MTR_0121s0100 N 0.729
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.854
MTR_1g075570 Medicago truncatula MTR_1g075570 N 0.708
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.875
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.875
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.812
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.854
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.854
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.833
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.750
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.812
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.854
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.854
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.792
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.833
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.854
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.854
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.771
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.792
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.854
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.792
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.833
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.854
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.708
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.896
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.708
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.854
PGSC0003DMG400035221 Solanum tuberosum PGSC0003DMG400035221 N 0.750
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.708
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.771
PGSC0003DMG400040127 Solanum tuberosum PGSC0003DMG400040127 N 0.750
PGSC0003DMG400040625 Solanum tuberosum PGSC0003DMG400040625 N 0.708
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.792
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.792
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.833
PGSC0003DMG400044513 Solanum tuberosum PGSC0003DMG400044513 N 0.729
PGSC0003DMG400045239 Solanum tuberosum PGSC0003DMG400045239 N 0.729
Pm016629 Prunus mume Pm016629 N 0.792
Pm021017 Prunus mume Pm021017 N 0.750
Pm021018 Prunus mume Pm021018 N 0.917
Pm021070 Prunus mume Pm021070 N 0.833
Pm021071 Prunus mume Pm021071 N 0.958
Pm030655 Prunus mume Pm030655 I 0.708
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.854
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.750
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.729
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.875
POPTR_0017s06710 Populus trichocarpa POPTR_0017s06710 N 0.708
POPTR_0017s06800 Populus trichocarpa POPTR_0017s06800 N 0.708
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.854
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.833
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.750
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.792
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.708
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.917
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.958
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.896
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.750
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.833
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.854
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.833
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.771
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.833
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.854
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.896
Solyc04g025050.1 Solanum lycopersicum Solyc04g025050.1 N 0.729
Solyc04g047870.1 Solanum lycopersicum Solyc04g047870.1 N 0.708
TCM_006323 Theobroma cacao TCM_006323 N 0.958
TCM_006324 Theobroma cacao TCM_006324 N 0.729
TCM_006325 Theobroma cacao TCM_006325 N 0.708
TCM_040735 Theobroma cacao TCM_040735 N 0.792
Thhalv10000432m.g Eutrema salsugineum Thhalv10000432m.g N 0.750
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.792
Thhalv10003315m.g Eutrema salsugineum Thhalv10003315m.g N 0.750
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.792
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.875
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.875
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.792
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.917
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.812
Thhalv10028255m.g Eutrema salsugineum Thhalv10028255m.g N 0.708
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.875
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.812
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.875
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.854
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.792
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.854
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.792
VIT_07s0005g06590 Vitis vinifera VIT_07s0005g06590 N 0.708
VIT_10s0003g03970 Vitis vinifera VIT_10s0003g03970 N 0.708